RNA id: TU235505


Basic Information

Item Value
RNA id TU235505
length 946
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G159055
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18670515 ~ 18672766 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtctgtgtgtgtgagtgtgtgtgtggacgggTTCTTTTTGGTTCTCTGGCCAGAGGGACTGATCTACGCCAAAAGAAGGGGCTGAGATGTTCTTCCGCATTCCTCTCCTGACACCTGGATACATTCGATACCTGCAGACTCAGGCTGCACGGACCAGTCTGCAGAGGGAGGGGCCTGTTGTACCCCGCTTTGCCATGCTACTAGGCCTTTTGGGCATTGGGATGTCCGGATACAGCTCTCGCCAGCTGACCTTATACTACAAGCCATCGCCACGTCTCCTGCGGTGAAACACAACACAGGAAACAGAGAAAACGTACCATTTTTGTTAAGAGGTGCGTTATTTCTTAAACAGACTGAACAAGCCAAATATCATCATTATACTTTTACCACATCATGCTGAAGCTCATAGTCTTGCTTTGGGTGCGAGGATGGCCGATCCTCAACCAAGCTCTCCCAAACTTGTTCTCTGGCAACAATGGATTAAATtaattgcttttactttttaattagttagttaattagtttaattactTAGTGAGCGTCCTACTCAATCAAATGTCAAAGGGGATATTATATAGACCTCAACGATGCCTCAAAGGCTACTTCAGTTCAGGGACAGGGGTTTACTTATCACTggattatatttttgatatttgtaaTACCAAAAATAACTGTTTGTGCACCTAAAGATTTTATAGATCGCTACAGGCTCGGCAGTCAGCCTAAATCCAGCAGCCAACAAGACTAGCACCGCTGTCACAGCGCAAACATTATGCAGAAGTATGACTTCAGTGTTTATGGATTTTCTTAAGGTAATTGTAAAAGACATATTGGTCTAATAAAGAGACCTTCATAGCTGTGAGTCACTATTTACAGGACAGGGCGTCTTActtaaaatacacaaagcaTTTAATATCCCATTTGTCTAAAGCAAACAatttctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235500 lncRNA downstream 21890 18648087 ~ 18648625 (-) True G159052
TU235490 lncRNA downstream 25827 18642262 ~ 18644688 (-) True G159048
TU235489 lncRNA downstream 25931 18642262 ~ 18644584 (-) False G159048
TU235492 lncRNA downstream 26441 18642262 ~ 18644074 (-) False G159048
XR_006247881.1 lncRNA downstream 55370 18613676 ~ 18615145 (-) True LOC122329081
TU235513 lncRNA upstream 6770 18679536 ~ 18680426 (-) True G159063
TU235539 lncRNA upstream 90967 18763733 ~ 18763933 (-) True G159079
XR_006247783.1 lncRNA upstream 272284 18945050 ~ 18983664 (-) True LOC122328331
XM_043225327.1 mRNA downstream 4324 18653452 ~ 18666191 (-) False si:ch211-225h24.2
XM_043225326.1 mRNA downstream 4327 18653452 ~ 18666188 (-) True si:ch211-225h24.2
XM_043225284.1 mRNA downstream 33017 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA downstream 33017 18624388 ~ 18637498 (-) False acp1
XM_043224447.1 mRNA downstream 77661 18585124 ~ 18592854 (-) False ccnt1
XM_043224665.1 mRNA upstream 141991 18814757 ~ 18829293 (-) True si:ch211-236h17.3
XM_043224322.1 mRNA upstream 313186 18985952 ~ 19059410 (-) True LOC122328577
XR_006247822.1 other downstream 434979 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 622637 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1327130 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1490736 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2311810 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 74625 18747391 ~ 18754712 (-) True G159076

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043303 False 545 lncRNA 0.48 2 NC_007134.7 35403904 ~ 35409639 (+)