RNA id: TU235513


Basic Information

Item Value
RNA id TU235513
length 800
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G159063
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18679536 ~ 18680426 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCTGACAAATTCACATAATTACCTTTCTAATTACAGGATTTGAGAATAAATAGACTCATGTATGGGCGCATCCCAAGATAAAATCCAAACAGATCTGAGACAAGACTGTACAATAATATCAAGGCAAGAAAAGGCATTAAATAATCTTCAAAGCCTAGAGAGAGACAtcattaaaaagatgaaatcATTTGGAACCGCTGTTAAAGAACTGGCTGTCCTCCAAAACTCAATGTCTGGGATTGAGAAAAGCAACGAGACCTATGGTAACCCAAAAGAGGATATAGTGTGTCATGACAGAGATGGAAGACGCACTATTGATGTCAATCGTCCCTAGAGCGGAGCATGATCAAGCTTTAATGATACTTCTTCAACATCAAGGGGACGAAAACTcatgaagaggaagaaaaaaaaacagactgagtgaaatgaaaaacaaggaTTTCACAAGGAAAGACAACTCATCTTCCAATACACGAAAATGGCCAAATCATACACAAAAAGTCCAAAATATGGAGacccataaaaacaaaagtCCAAGATAGTGTTTACTCTTTTATATGcatacagacaaaaacacacaaaataccTGGTCTGACGACAGACATAGCAGTGAGGAACTGACACAGAAGAAGCTGTTTACTCAGGATCTCCTGAATGTTCTCTTGGCCCTCCACAGAAAACCCCATCTGCCATTATGAAGTGCAGTCCGCGCCCTTCAGTGCTGTCTAAGACAAAGTTACGAAACGCAGTGATGTTTTCTGGCCGCGTGATGTCACCATCACCATCAATCCCACCCTC

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235505 lncRNA downstream 6770 18670515 ~ 18672766 (-) True G159055
TU235500 lncRNA downstream 30911 18648087 ~ 18648625 (-) True G159052
TU235490 lncRNA downstream 34848 18642262 ~ 18644688 (-) True G159048
TU235489 lncRNA downstream 34952 18642262 ~ 18644584 (-) False G159048
TU235492 lncRNA downstream 35462 18642262 ~ 18644074 (-) False G159048
TU235539 lncRNA upstream 83307 18763733 ~ 18763933 (-) True G159079
XR_006247783.1 lncRNA upstream 264624 18945050 ~ 18983664 (-) True LOC122328331
XM_043225327.1 mRNA downstream 13345 18653452 ~ 18666191 (-) False si:ch211-225h24.2
XM_043225326.1 mRNA downstream 13348 18653452 ~ 18666188 (-) True si:ch211-225h24.2
XM_043225284.1 mRNA downstream 42038 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA downstream 42038 18624388 ~ 18637498 (-) False acp1
XM_043224447.1 mRNA downstream 86682 18585124 ~ 18592854 (-) False ccnt1
XM_043224665.1 mRNA upstream 134331 18814757 ~ 18829293 (-) True si:ch211-236h17.3
XM_043224322.1 mRNA upstream 305526 18985952 ~ 19059410 (-) True LOC122328577
XR_006247822.1 other downstream 444000 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 631658 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1336151 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1499757 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2320831 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 66965 18747391 ~ 18754712 (-) True G159076

Expression Profile