RNA id: TU235534


Basic Information

Item Value
RNA id TU235534
length 7297
RNA type TUCP
GC content 0.41
exon number 2
gene id G159076
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18747391 ~ 18754712 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTAGACGACTGGTATGAGACCGTCAATCATTTTAAGGCGTATAAACTGAATGCATGAATGACGCATTGCAAGCACAACTATTGAATTAAACTGTTCTGCAAAGTCTCACTTGTGgaattcaaaatagaaatgaaaacttTGCGCTGATGCAGTGCATTCATATGGAATCAATGTAACTGTAGAAGCATctattaaatacacataaacacaaacaagacaacacaaaaacaaaaaagttcttattttcaatttatttgtaaatgcatcTGATGTATatcaagaaaaatatataatattttatatatatatatttatatattgaattGTTATTATGTACATTGGTTTACATTTTACAGGGGACATTTATACAATCAAAGACGCGAGTACGTCAGTAGAAGAATATCCGGTACTCTCTGATCCAACGACATTTTGTACAAAGTctgtacatacagtatacatacatTCAATGTTGGCCATAAGCACCAATTTCACCAAAAATTTCATGTATAGACGGCAAGGAATGCAACGCTAACAGTACGCAACCTCCGCCTGGGTGTACTCGTGACGTACATTTACTACATTTAGATGTTCGgggctttaaaacaaacaattgtATGTGGTTACCTCTTTCAGTGAGCAACAATAACGTAATTGGAGAGATATTTATCCTCCATGGCACTGGTTTGTATGTTAAACAGGCACAAACAGCAGCAAAAAATCCCTATACTGTAGGCAGACAAATGTCTTTCCTTCATTCCTACAGGACTCTTCTGGTCTTCGAGAGGTCTGAGTGGTTCTGGTTTCTTCCCGCTCTGCGATATCTGATCCGAGATCGGATTTCCTGACCACAACAGTTGCTAAATATTATAAGCAGAGCAGCAAAACGATAccataatcatttttatgcattcctCCGAAGCACATGTCAACTCGTAGAGCAAGTAAGAGAACTAGAAGAGATAAGTATATACTtgagtgtatgtgtatatacgtgAACACATCTATAGGTGCCTGTTGTGCCTGTTGGCGCAGTACAAAGAGCAACGAGTTGATTCATCACCTGAGGCACTCTGGGTAACTTTGTAGTTGTTTCCAtttgggtttttgttttggcaAAAACAGACTGCATAATACAGATTGCATTGTCAAGGTTGTTACAAAGCTCTCATTACAATCCAATTCAATTgtataattttgttaaatattagcaTTAACTATCAGCACCCCACTGGATATTACGACGCATTCTTTCGCGAACACATGGTCAGCGAGCTCTATCAGTAGTCAAGCTGTGTCCATGACTACAGTTCCCATGAAGAATGTCCTCTTTGAACTCCAAATGCGTCTCAGACTACGTTTCCCAAGCAGGAGGATTTGACCTGCAAGCGTCCCCTGTGCGGGAGCTCGCGGTTGAGACCGGTTAGCACCTTGCAATTCCAGTTTCTGTCATTCAAGCTCATCTCGCAGAGACGTTTTGGCAGATAGTCCCAGGTCAAAAGGACTCTTTGAGGCAGGTTAGAAAGGGTTGATCGTCTGTATTGACCTAGCTTAGCTATCAACTTACTGACTCGGATCGTTGGATTTTTCAGATATGAAATGTGTTACATTGCTGTCGAAAATAACTTCTAACCGCAAACACTTAACCACGAATGCCTTGGCCCCGGCTGCAAACATTAAGATTAGAGAAAGGCCAAGAAGGtatcttgttttaattttttaaaagcaaccaATGACAAAGACGACGattgaaatgaaaaagtttTGTGATATAACTAAAACGTAagggaaaaaaattcaatacTGATCAGAAGGCCCATTCACATACGTCAAATGTGCGTGTTTTGACTACCGTCAATTCGCTCTATGGTCTGTCCGGAGGCGTTTCACAGTTTGCTAGCATACAACTGAAAGTCAAGAGGAAAAGCCTCTGTTTGCCAATAGCTTATAATGGCACAGTCCTACCATTGATCAGTAGTTCAAATGAACCCGAGTTTTTTTGGTTTAGAGGAGCTAAACACGTTATGTTGGCAAAAAGAAGTGACTTTATCGTGATTTTGAACAAGGAATGTTGATGACTGGCAGATACATCAACAATTCATACCTcaaaagtacaacaaaaaatgctttgaacGTTACATGTTGCAAACAAATTTGTTCTTGAAACATAGAAAACAATCATGAACGCTACAAAAATACAATCTACGAAGCTTACGACATCCGTGAGGCAGATGAGTCAAGTAACAGTTTCAGAACAAACTCTTCTTCAGTTCATCCAAGCCTCATATAATAAATTATCACAGTACCACAAATGAATCGGAATTCTGAATGAATTCTCTcactttctttcatccattcgTTCGGtctttttatctctctctccatgGCGGGGGGTTGTGTGGGGTCAGTGTGCAGTGCGCGCTGTCCTGCTGCTTCGTGGAAAGCGATGGACTTTGATGTGTTTGGACAGGTGATCGCTGCGGGCAAATTTCTTCTCGCAGACGGGGCACTGGTAGGGCTTAACTCCAGAGTGAGACCGACGATGCCGTGACAGCTCGTCCGACCGGGAGAATCTGCAAGAAGAATCCAGAGATAAAGCCAAATATGAATGGTTGTGCACTGAtccagttcattttttttttttactgtaaagctTTGGTTGTAGAAAATGCACTATATGGCTTTTTGCTTTCGTTGGTATTTTTCATGTCTAAAAAAAGCAGAGGGCCTAAATGCTTCAGTTACAGTTGTTTTGAAGTCAACATGGTCCTTATTTAGTCTGTATATTCCTTGTGTTGGTCTTCATGATCATTCATCTACTTGCGCTGCCTTTAAAACCACCTTTAAAGTATCCTTTACTTTTCTTCACTACTCTGCTATCTTAGCCCAGCGTTTCTCTTGTCGAATATCTTATTTCATGAAGTAATGCATCAGATTATTGAAGAAAAAGgccaaaaacaacatttatcatTGATTAGTTAATCACTGGACAAACATAATGGAAATATAGAATATTAAGCAAAACAGATCATAAATCTAAGCTTATTTGGACAAGACAGCTCATTACTCACAATAATAAACCCTACAGCACATTTTTTGTTCTCTTATATTTGTGATTTGGTAAGAGCAACCGTCTCTGTGAAATCAGACAAAAGGTGAAAAGAGTGCTGGAGTTACTGAgtaacaaaatgaaaagcacAGAATCAGTGACAGTGAAATCTCTTTCACAGGCTTTGAGGTGAATACCCTGACACAGAGCGCATGCAACGTCAAATAAAACTGTCAAACAATTGCTCAGTGTCTTCACTACTGAGCAGCAAATGGTTTGAGCTTGGAGCAGATCTAATGAGCAACTATATTTAACCCAGCGCTTAACCCGGTGCTCAAGTTCCAAAAGAAGATTTGCACCACATTCATGCCTGTTAATGTTTTCTGAAAGCAAGACCCAGAAGAGGGAAAACTCACAGgttctttttagaaaatatgGAAGCATTTTCCATAACTCAATTTGCAGTTCTCTCTTGCTCAAGTTATGCCATACACCCTGCACAGAAAGTAAAAGAGACTCCTGGGAAATCAGTTGTATTACATCTCTGGTGTAAAAATAACTGTCAACTTTACACCTTTATACTACCAAATAGACATTGTACTCGATAATAAGCACCTGAAGATAGTGTTCACttctgtttgaaatgaaaaaaccAGGACAACAAACTCTTGCTCAACCCCATGCCATGGTTTCATATGAAGCCATAGGCAGTATCTGTTTCTAATGTCCCAGGAACATGTGTAGAGTATTTGCAAGGCTATAAAAAccagtgtctctctctcctgcttGACTTTTCTTCAATTTTTACAACAAGCTTAGACAGGAACGGTAGAGTTGTAACTATGCTAACAGTAATGCACTAACTTTGTGCTGGATCCAAAAATAAACCCCCTGCAGCGATAGCACGACTAACAAAACTAACAAGAAAATTCTCATTTCATAATCAAAAGAGAAGACAAATAAGTCATGTAACATATGCTAACTGTAATGCTAATTAAACCATAATGCCTTTTTTGACTGAAAATGTATCGTACATTCTAAAATGCCACATGTATGGTATGCGAGCAAGTCTTTGAAGTGTGTTGGGATAGGATGGTGGTGGACTAATTGCTGCCCTGTGGGATGGGATGGGATGGGATGCCCCTCCTTGTTCGACGTCAGAGCTCACAAGCAGAGCTGTTCCAGCATGCTCCACAGCACATGCTTTTAACTTCTATTCAAATacctacatttttgcattgtggTCGAAAAGCTATTCCTTTGTAACCAACTATAAGTACTCTCTTAATTTGATTCCACCTTGCAAATctgtattttccattttaaaacaaaaagagttaTGCTAAAGCATTTGGTCTGCTCAAGCATACTCGCATGTTGATACTGCAAACTATTAGTTGAAataaagcttttcatgcaggtTTTGTCCTCTATTAACCTTTGTGTGCAAGCtgtataaaaaaagtacttCCTTGTTTGTTTCCAGCTGCATGGGGGAATAGCAAAGAACAGGACGTGTGTGCAAAGATGTTATCATCTAGCCAACTGCTGTGTTTTCTAGTCAAGTATCATGTTTAAAGCCATTGTGTGTGCTTTTAGGTCTAAGAAATTTTTAGTCTAAGTGTGAGTatggttttgtgtgtttgtgtcactaGGACAATTTTATTTGCGGAGTACCATAGGAATGCTAAAAATGCTGGCAAAGCATTGCCGCAGCCAGGCTTGAGGCAGCCAATGGGGCATTCTTCTGTTGCTTTCTTCCCTACATCCATTCCCTGACAGTGTCCCGGAGACCTCAGTCAGACTCGCAGACTGCTGAAGGCCAGTCACTGCCAACTGCTATCCAGAAGCAAGGCTAGCCAAGGTCACTGATAACAACAGACCTCTTGAAACACTAAGTCTTATCATACTTAGCTAGAAGCTCTCTCTTGACGGTTCTAACTAGCCAATCcaattttggatttttttaaataatcagcaTCTTCTGGGAAGGGTCTGATCTGGGAATCAGGGGTACCAAGTGCTTGAGGAATGTAGTTATTTAAACTTGGTAACCCATGCAGTCAATTCAAGCTTACACTTTAAGAGTTAGCACCcccaagaatgaaaaaaatacaagaacCAAATTATTCACTTTAAGCTTTATCTATACTGTCAATCCTGACCTCACTACAACTGCTGGTGCACTTTAAACAGTGTCCAGGCCTTGTTCAGAGATTGAAGCTGGACATAGACTAAGAGTAAACAAATGAAGCAGCGAATAGGGCAAAGTCTGCCTCTTCAAAGACTTTATCTAATCTCCAAACAGCAGAGATAACACAAAACAAGACCCAAAATCTAAGGACAAATTGTGAATGAAATTTTACAGCTGCAATACAAAGTCATTATCAAGCAGTGTTGGGGAGTAACTACCTAAAAGTAACAGAGCTACTAACTAGACTACATTTATCAATAATGCGATCggcttttatattattatttattatatatttattatatatttgtttacagtAACAAGCTAAAGTTTACAATGAGTAGTGGTACAGAATAACCACTTGCATGCTTAATTGCATTCTATTTAGCTTTTTGCAACTTTGCAGCATAAGAGAGTTGAGGTAATAATCAAACTCGTTCTATTTCTCtattaaaatgttagttttttcaACACCCTAGAGGGCCAATATCATGCAGAGTTTACACCAGATCGTAATTAAACACACCAGAACCAGCTAATTTTCAGGATTACTAGAAACTTCTAAACTAAACTTGATGttacatgaaacaaaatgcCTGTCCAAAATGGATAGTCCACATGCTAGAGCTTTACTTAGTCTCTGTTTGAAGTCCATTAATGGATGGTCAACAAAGATAATGATGTACTATACTCATTTCGCAATAACTACAAATTGCTGGAGTGAAAGCCCTTCATACACATGCAGACCTTGACATCTAACCtcacaaaaaacacaactgtaCTGAACAGAACAGAACTCTCACCTCCAGCCACAGCCAGGCCAAGTGCAGGCAAATGGTTTCTCGCCAGTGTGTCTCCTCAGGTGTGCCTTTAGGTGGCTGCTCTTGGTGTACATCTTGGCACAGCCAGGGAAAGTACacttgtgcattttaataagaTCAGCTACCGAGCTCTTCTGGAATTTGTGACCTCCAACTACAAGCCCTGTTCCCTGGCCATCAACTGTTCCATTCTCCCCTAGACCTAAGGGTTTAGCGGCAATGGGAACTGGGGCAATACGGACAAACTTGGAGGAAGAGCTGTTAAGGCTTGCCGGTGGGATCACCTGAGGAACCAGGGCGAACGTTTGACCCTGGATGTTGACAAGGAGCTGGGTTATTTTGATGTCTGAGGCAGGTTGTGGTGTTGGTGGTGAGGGGGCAGTTTTAGGGCTCAATTCCTGTTTCATTTGAATGGGCTGGAGCTGTAAGATCACAGGCATACTAGGACTATCCACCATCACTACCTTCCCAGAAGAGTCCTCCTTTTTCAACATGTCCTGAGGATTTGTGGCGGCCCCTCCTGTGAATTGTGCACTTTTGGGATCAGAGTTGGCGTCGACTATGTTACTTGAGACAGGCACTGTTTGGTCTAAGCTTTGAGCCCAAGGTTCTGATGCAGGTCCTTGGATGCTCTCACAGGACACTAGACCCTCTCCAGCTTCCTCTTTCAAGGCTACCACTTCCATGTTCTCCTCCAGGAACTCCTCAATCTCCTCCAGAGTGGGCTGAAACAGTAGCCCTGCATGGTCCTCCAaatctccaggaaaaacagggAACTCAAAGCACTCCTCTTTGGTGGTGCGGTCCCGTCGTGACTCCCAAGCCAGACCCATGGGAAGAACAGGAGGGACCATGGGAGACACGGTGGTGGAGGATGGTGAGTTTTGGCTCAGTGTTAGGGACTGAGAGTGAAGGAAGTCAAGGAGGCCATCTTGACTTTCTCCACTTGAGTTACTCCCACAACTAGAGCCCAACACCTGTGACTCAGGGCTGGAACAGGAACGTGGGCTAGATGAGTCACTCAGGTTATCCTCTGAGAATGGTGATGGAAGCATATGGTACACCCCCTCGTCTGTCACCATATCCGATGGGTTGTGGGCTGGCAGCAAACAAGTGTAAGGAAAGAAAGTCTCTTCATCAAGCAGCAGGTGATCCACCATTCCTGGCTACTGCCTGTCCAAAGTGCAGTGACCACTTTTGCAGTTCCCTGCTTTGAATGATTCAGGTTTTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235504 lncRNA downstream 15575 18664402 ~ 18731816 (-) True G159054
TU235513 lncRNA downstream 66965 18679536 ~ 18680426 (-) True G159063
TU235505 lncRNA downstream 74625 18670515 ~ 18672766 (-) True G159055
TU235500 lncRNA downstream 98766 18648087 ~ 18648625 (-) True G159052
TU235490 lncRNA downstream 102703 18642262 ~ 18644688 (-) True G159048
TU235539 lncRNA upstream 9021 18763733 ~ 18763933 (-) True G159079
XR_006247783.1 lncRNA upstream 190338 18945050 ~ 18983664 (-) True LOC122328331
XM_043225327.1 mRNA downstream 81200 18653452 ~ 18666191 (-) False si:ch211-225h24.2
XM_043225326.1 mRNA downstream 81203 18653452 ~ 18666188 (-) True si:ch211-225h24.2
XM_043225284.1 mRNA downstream 109893 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA downstream 109893 18624388 ~ 18637498 (-) False acp1
XM_043224447.1 mRNA downstream 154537 18585124 ~ 18592854 (-) False ccnt1
XM_043224665.1 mRNA upstream 60045 18814757 ~ 18829293 (-) True si:ch211-236h17.3
XM_043224322.1 mRNA upstream 231240 18985952 ~ 19059410 (-) True LOC122328577
XR_006247822.1 other downstream 511855 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 699513 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1404006 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1567612 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2388686 16357652 ~ 16358705 (-) False G158336

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00016949 True 903 mRNA 0.55 2 CM030122.1 36299372 ~ 36301893 (+)