Fish Transcriptome and Expression Database

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ornamental fish

RNA id: TU235539

Basic Information

Item	Value
RNA id	TU235539
length	201
lncRNA type	inter_gene
GC content	0.38
exon number	1
gene id	G159079
representative	True

Chromosome Information

Item	Value
chromosome id	NC_056721.1
NCBI id	CM032090.1
chromosome length	19062720
location	18763733 ~ 18763933 (-)
genome version	ASM1883169v1_2021_tiger_barb_Genome
species	tiger barb (Puntius tetrazona)

Sequence

attttaaaaaagaagcagcttaatgtaaatatacatttttaaagttgttttaagcCAAAGCTTgcagtaaaattacattaatgtgAGGATTCTCCAGACCTGACGGAGGCAGCAGAGAGGATAATGCTGCTTCAGACAACACTGAAAGAAGTCCCTCTGTCTTCACCCAATAAGCCCCCATGTTTCCAAAGactgaaatct

Function

GO: NA

KEGG: NA

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU235504	lncRNA	downstream	31917	18664402 ~ 18731816 (-)	True	G159054
TU235513	lncRNA	downstream	83307	18679536 ~ 18680426 (-)	True	G159063
TU235505	lncRNA	downstream	90967	18670515 ~ 18672766 (-)	True	G159055
TU235500	lncRNA	downstream	115108	18648087 ~ 18648625 (-)	True	G159052
TU235490	lncRNA	downstream	119045	18642262 ~ 18644688 (-)	True	G159048
XR_006247783.1	lncRNA	upstream	181117	18945050 ~ 18983664 (-)	True	LOC122328331
XM_043225327.1	mRNA	downstream	97542	18653452 ~ 18666191 (-)	False	si:ch211-225h24.2
XM_043225326.1	mRNA	downstream	97545	18653452 ~ 18666188 (-)	True	si:ch211-225h24.2
XM_043225284.1	mRNA	downstream	126235	18624388 ~ 18637498 (-)	True	acp1
XM_043225285.1	mRNA	downstream	126235	18624388 ~ 18637498 (-)	False	acp1
XM_043224447.1	mRNA	downstream	170879	18585124 ~ 18592854 (-)	False	ccnt1
XM_043224665.1	mRNA	upstream	50824	18814757 ~ 18829293 (-)	True	si:ch211-236h17.3
XM_043224322.1	mRNA	upstream	222019	18985952 ~ 19059410 (-)	True	LOC122328577
TU235534	other	downstream	9021	18747391 ~ 18754712 (-)	True	G159076
XR_006247822.1	other	downstream	528197	18231643 ~ 18235536 (-)	False	hnrnpa1b
TU235255	other	downstream	715855	18045938 ~ 18047878 (-)	False	march9
TU234899	other	downstream	1420348	17339267 ~ 17343385 (-)	True	G158609
TU234864	other	downstream	1583954	17176652 ~ 17179779 (-)	False	slc48a1a

Expression Profile