RNA id: XM_043224322.1


Basic Information

Item Value
RNA id XM_043224322.1
length 7144
RNA type mRNA
GC content 0.46
exon number 27
gene id LOC122328577
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18985952 ~ 19059410 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTGTCCTCAGATCCTGCCAAGGTCCACTCAGATCTACATCCCTGTTGGTGTGATGAAGCTCCATCACTTTGTTGGCCGGGACCTTCCACAGCCTCAGTCTGGGCAGAGGAACTACGAGTGCATCTTCTATATTCGAGGGAAGGAGTACAGTGTCACTGCGCTAAGCGCTTCAACAGCACCAGCATACAGTGTCAGGAAGACCATGtATGACTATGAAGGAAATGACATCAGCGATCTGCCGGTGGATCTCTCAGTTGTGTGGAATGGAGATTTTGTCATTGACAACCCCTACAATATCCAAGCGCACCTGTACAAGTGTTACGCCATGCGGGACAGCTGTGGGATGTGTTTGAAAGCGGATCCCCGGTTCGACTGCGGCTGGTGCGTGCAGGAGAAGAAGTGTTCGCTGAGACAGGAGTGTGCTCCTCCAGAGAGCATCTGGATGCACCCCAGCGCAGGAAACAGTCGCTGCGCGCACCCCAAAATCAACAAGCTGTTACCTGAGACTGGACCACGGCAAGGTGGAACCAGACTCACCATCACCGGAGAGAACCTGGGTCTACAGTTTAGAGACATTATGACAGGTGTCTGTCTGGGAAAAGTACCCTGCGTTCCTATTGAAGAGGAATATGTTAGTGCAGAAAGGATTGTGTGTCTGCTGAACGACGCCACAGGATACCGCGTACAGGAAGCCCAGGTGGAGGTGTGCGTTAGAGACTGTCTGGCTGACTACAGAGCCCTCTCACCCAGGGCTTTCACCTTTGTGACGCCGTACTTCACACGTGTTCAGCCCGTTCAAGGACCTCTTTCAGGGGGAACCAGAATCACTATTGAAGGAAACCATCTCAACGCTGGCAGCTCTGTTGCAGTCAACATTGGGCGCCACCCTTgtcactttaaaaaGCGGAGCTCTAAAGAGATTGTGTGCGTTGACCCGGCTGGCGTGATCGCGGGAAGTACTCCGGTTATGGTGGACATTGACTCTGCTGAGCTGAGGAACCCTGAGGTGAAGTTTAACTACACAGAGGACCCCACCATCCTGAAGATAGACCCGGACTGGACCATTGCTAGCGGTGGGACTCTGCTGACGATCAGCGGCACCAACCTGGCCACCATTAAAGAGCCCAAGATCCGCGCCAAGTACGGCTCTGCCGAGTCCTTCCATAACTGCACAGTTTTCAACAACTCCGTTATGGTCTGTCTGGCCCCGTCTGTGGCTGATTCGGACAGAGGCTTTGCTGAGACTGGCAGCGGACCGGATGAGATCGGCTTCTACATGGATAACGTCCACGCCCTTGTGGTGGTCAACGAGAGCTTCAGCTACTACCCGGACCCCGTCTTTGAACCCCTCAGTCCAACAGGCATTCTGGAGCTCAAACCAACATCGCCCCTTATCCTGAAGGGTCGTAATTTGATTCCTGCGGCGGGTAACTCCAGACTTAACTACACAGTGTTTATTGGAGAGACGGCGTGCGTTCTGACTCTCTCCGAGACCCAGTTGCTATGCAGGCCCAACCTCACCGGACAGCACAAAGTGACGATCCGGGCAGGAGGGTTTGAATATTCCCCGGGCACGCTGCAGATCTACTCCGACAGCCTTCTCACCTTGCCTGCCATCATCGGGATCGGAGGAGGTGGAGGCCTCCTGCTGCTGGTCATCATCGCGGTGCTCATCGCCTACAAGCGCAAGTCCCATGGCGCTGACCGCACACTCAAAAGACTGCAGCTGCAAATGGATAACCTGGAGTCCAGAGTCGCTCTCGAGTGCAAAGAAGCTTTCGCTGAACTCCAAACTGACATCCATGAACTGACCCAAGAGCTGGATGGAGCTGGTATCCCATTCCTGGATTATCGAACCTACGCCATGAGGGTCCTGTTCCCTGGCATTGAGGACCACCCAGTGCTCAAGGAGATGGAGGTTCAAGCTAATGTCGAGAAGGCCTTGACTCTGTTTGGTCAACTCCTCACCAAGAAGCACTTCCTGCTGACATTTATCCGCACGCTGGAAGCTCAGCGCTCCTTCTCCATGCGTGACCGTGGCAATGTGGCATCACTCATCATGACAGCTCTACAGGGAGAGATGGAGTACGCTACAGGAGTCCTTAAACAGCTGCTCTCTGACCTCATCGACAAGACTGAGAGCAAGAACCACCCTAAACTGCTGCTCAGGAGaACTGAGTCTGTTGCTGAGAAGATGCTTACGAACTGGTTCACTTTTCTGCTGTACAAGTTCTTAAAAGAGTGTGCAGGTGAGCCTCTCTTCATGCTGTACTGTGCTATAAAACAGCAGATGGAAAAAGGCCCTATAGACGCCATCACTGGAGAGGCCCGATACTCTCTCAGTGAGGACAAACTCATCCGACAGCAGATTGACTACAAGACTCTGACTCTTCACTGTGTGAACCCTGAGAACGAGAACGGCCCAGAGGTGACTGTGAAATGCCTGAACTGTGACACTATCACCCAGGTGAAGGAGAAGCTTCTGGATGCTGTGTATAAAGGAAGCCCATACTCCCAGAGACCCAAAGCAGGAGATATGGACCTGGagTGGCGGCAGGGGCGACTGGCGAGGATCATTCTGCAGGATGAGGATGTCACTACTAAGATTGATAATGACTGGAAACGCCTGAACACACTAGCACACTATCAGGTAACAGATGGGTCTGTTATCGCCCTGGTGCCAAAGCAAAACTCTGCATACAACATCTCAAACTCATCTACCTTCACCAAGTCCCTCAGCAGATACGATAGTATGTTGAGGACGGCCAGCAGCCCAGACAGTCTGCGGTCCAGGACGCCCATGATCACACCCGATCTAGAGAGCGGTACCAAACTCTGGCACCTTGTCAAAAACCACGACCATGCAGACCAACGAGAGGGAGATCGCGGGAGCAAGATGGTGTCAGAGATCTACCTGACACGACTGCTGGCCACCAAGGGTACTTTACAGAAATTTGTCGATGATTTGTTTGAGACGATATTCAGCACGGCTCACCGTGGCAGTGCCCTCCCTCTCGCCATTAAATACATGTTTGACTTCCTGGACGAGCAGGCGGACAAACACCAAATCACAGATTCAGATGTTCGACACACCTGGAAGAGCAACTGTTTGCCTTTGAGGTTCTGGGTGAACGTGATCAAGAACCCTCAGTTTGTGTTCGACATCCACAAGAACAGCATCACAGATGCGTGCCTCTCCGTAGTGGCCCAAACCTTCATGGACTCCTGCTCCACATCTGAACACAAGCTCGGCAAAGATTCCCCTTCTAATAAGCTGCTCTATGCTAAAGATATTCCCAACTACAAGAACTGGGTAGAAAGGTATTACTCAGACATCGCACGCATGCCTGCCATCAGTGATCAGGACATGAGCGCTTATCTCGCGGAGCAGTCCAGACTCCACCTGAGCCAGTTTAACAGCATGAGCGCCCTTCACGAGATCTACTCCTACATCACCAAGTACAAAGACGAGATCCTGTCCGCACTACAGAAGGACGAGTTAGCTCGGCGACAGAGACTGCGCAGTAAACTGGAACAGGTTATCGACACCATGGCTCTGACAAGCTGAGGACCTCCTCCCCGTCTCTCCACCCACCTCAGCTGTCTCCCTCTGACCTCCTGACCCCGCCCCCGAGCCTCGCttacaggcacacacacacacacacacacacacacgcacgcacgcacatacacaaacacacacacactaagctAACGGACTGCAAGGACAGAAGCAGTACACTGGAGACCCCTCAGCCCAGGGTGGAAATCCTCTTTCATCACTTCCTTTGAACTCAACACGTACCAGAATGTCTCCCCGGACGCCACGTCCAACCAATAGGACTTcgttttttggatttttatcattttggagTGTGTGTTGAGCCATGCTTGTGTGCTTTTACTCACCAAGGATGTCTTGTATTATGAGCCAGAAGACCTTAAAGCCCATGAAGGATAAAAgcggtgtcttttttttttcccccacccGACATACAGCATTTTGATTTAGCGCTTactttaacaactttttttactCTTCGGGTTGATCAAACAACTCACTCACTCCAGTCTCCTGCCACTTGTGTTACTGCTGAATTTGCACAATTTACAGGAACTacaacaaatgaaaatgatataaatatatatataaatgtgtatagatatataaatacaactgcatttttatacaaaaagaGTGAAAAGATGCGTACAAAGTTTTCCATTTTAACATAGAAAAGAATAAGATGAATTTGATATGTGAAACAAAGACtgaactatgaaaaaaaaaatatcgaaAAAAATGTCCTGTgccatgttttatttgaatgttgtttagtgcaaaaaaaacgATTTTCTTTAGATAAAATGTGCTATGATTTAAATGTTGACTACCCTAGTGACTGAAGAACTGAGagtgaaaaaaatgtgcaaaaaagaaCAAACTCAGACAAATGTGTTCCCATGTGGTACCTAGTGTTTTTTGAGGAAATCGTCCTCACGAAAAACAAAAGGTTCATTGTTTAGTTGGTGGATGAATCtgtgtatttagtttttgtacacttttttcaACCTTTATTGCTATTATGGTTTTAGTCTGAAAGCCACTTGAGGACATATTCTTTGCTATTCCGTGTGAAAACTCGATCGAAAATTAATAATTGGCcgttttcattttgtgttcctTTCTCATATTCAGACGCGAGCACTCTAAGCCTCGgtaatttttgcacaattcAGTCTAGAATGAAGGAAAACTTGAGATTGAAGAACTGACGAATGTGTTTCGTTACTGATGATGTCACAATGTCGCATTCTGAGAAGGTTCAGTGGCATCGCAGTAAATGTAGCAAATGTTAATTCCATGCAGTTCCACTCACTTTTAGCAGCCTCCGTTTGTTAAAAGCTTACAAATCAAACCGTTGAGCACAGAACTTGTTTTTAAACTGATTAATTGTATGTGAATGCCACCCGTTCACGAAAACTGATAGTTAAGCTGATTTGAATTCATCTCAGAAAAGTGGTACCTATCGTCACGTCCTTAAACGCCCATCATGTCAGCAGTAGATGCTTTTTATggaatatgtgtatttattttatgttttgttgttcAATTTCGAGCTCATAAGCTACTTGGTTTCCttaatgccatttttattggatgtttttgtgctttttctcGATTTTTTCAACAGCCCACTAACTCGTCTCTATCAAGATTGGTGATTTGCAGtgttacaaatacaaatgtgaAGCGATTCTCAAACTGTTTCAGGGGTATCAAGCGGATGAAGTCGAGCTCTGCTTTACTTTTCTTCGCCATCTTGGTTGTTTTGGAGTTTCTCTTTATCTTCTCTCTTGCGAGCGTCGGTAACTCTGCGAGGATGTGTATTGCAGTGACTGGCTTTCATGTGCTGCAGCAGTTCTCTTAAAGTCAGTCGTGTTCAAACAAGAGAGAGCCTCTCCTCCTTTGGCTTTCCACTGAGATTAAAGCAGAAGTAGACTTTCTGAGATGCGATAGAAACGTCTTTGAAAGATTTAGGTCAGAACCCCaatgagagaaagagcgagGCGCACCAACCGAACGTTTGACAGGATCTCGCTCGCGTTACCTCAGCCATACATCAGGGTTCGTTCCAGCTGGGAAAGTAATAATGAATCActctttacacatttatttattttgggatTACGGTTTACGTTATTGATTTCATGCCATTGCGATTTCTCCTAATCAACCCGGAGCAGGCCTCCACAACTCTCTACGACGTATCTTCCACGAACAAGACAATCTCCTTGTAGACTCGAGATGTTCACCTGTTAGGAGCGGTCTTTGTTTTCAGTCTTTTCACAGGTGTTTACGAATTCGAAAGCGAATTAGAACGGTGTTGGATTTGCTCGCTTGTTTGTGTTTAGCTCTCATGAACTCTTAGCTATCATTTCTGGCAATCTTAGAGCTACGTGGAAGGAAGCATAAATGAAgtagatagatcgatagatagacTTCCTAACATACAGGACACAACTGCCGGACGTATATGTCTTAAATTTAAGAGTAGAAGGAAAAGGCTAGACGTTTAGCATTGCAGGTGACTTAGACCCTTCCGTCTGGCTTTCCTTAAGTTAGTATGTTCCATTCATTTTCAGTAGATGAGTTTCTGCATGCTTcgacattacaaaataatttgagAATACAAGCATGCTGTTCTACTTTCATTCCAAAGGCTGATGATGATCATTCTACATATCATAATGTACGGtctaacaatgtttttttttttttatcattgttttcCGGATGGAAAAATCTCAATGTGCTTTGCTTTGTGCTACGTAAGCGGGACTTTGGTGATGGTGATTGTAAAGCAGCTGGTTGCATTGTAATGTCTCAGGACGTGTTTCACTTTGATGTCGTCTTTGCCTTTCTTTCATgcgatttattttttatgacgAGTGCTATCTTTGATTTTCAATGGTTTTTAGATGTTGAGTTGTGGAACATGTGGAACTCTTCAGAGATATTCTAACATTTCAAAGACTTCGCTGTGTAAAGTATTTGAGTGATGCCTCTCATTTTACGACACTTGTTTTGAGAACTACTTTGAGTAcaggaacaaacaaacaaaaaaacgaaggAAAACAAGCCGAACATAAGGTGTTTCAGACTCACAGAGCTTTCGTTTCGCACAGAGTGCCTtgtcaactctctctctctctcatttctctcGACCTCCTCCGACCCTTCCATTTCCCACAATCCATTTCTTTCCATACGCCTCTTTATCTTTGTCTGGCCACGCCCTCTTTCTTACACTCCTCCTCAGTCCAAAAGACCAATCCGGGTTTTGATTTCTGCTCATGGTGTTTCCAGATTGAAGAAAAAATCCTTTTTGGAAGGATGAATTAACTTAAGCGTAGGAACAAAAATGTGAGCATGTAGATTTCAAAGAAAACGAAAACTAAagaattttaatactttattaattcTGATACCTTTTGAAGAGTTTCAGACTTGAATCAACTGTGACAGGTTGGCTGTTAAATGCTCATTGTGTAAATATTGTGCTCTTTCCTATTTTGCAaatttattatgtgtaaatatacacatgcatcaAGGAGAGATTAAACATTTTTCGCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247783.1 lncRNA downstream 2288 18945050 ~ 18983664 (-) True LOC122328331
TU235539 lncRNA downstream 222019 18763733 ~ 18763933 (-) True G159079
TU235504 lncRNA downstream 254136 18664402 ~ 18731816 (-) True G159054
TU235513 lncRNA downstream 305526 18679536 ~ 18680426 (-) True G159063
TU235505 lncRNA downstream 313186 18670515 ~ 18672766 (-) True G159055
XM_043224665.1 mRNA downstream 156659 18814757 ~ 18829293 (-) True si:ch211-236h17.3
XM_043225327.1 mRNA downstream 319761 18653452 ~ 18666191 (-) False si:ch211-225h24.2
XM_043225326.1 mRNA downstream 319764 18653452 ~ 18666188 (-) True si:ch211-225h24.2
XM_043225284.1 mRNA downstream 348454 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA downstream 348454 18624388 ~ 18637498 (-) False acp1
TU235534 other downstream 231240 18747391 ~ 18754712 (-) True G159076
XR_006247822.1 other downstream 750416 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 938074 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1642567 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1806173 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile