RNA id: XM_043224382.1


Basic Information

Item Value
RNA id XM_043224382.1
length 4227
RNA type mRNA
GC content 0.42
exon number 10
gene id gdi1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14672277 ~ 14679231 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCTCGGGCGTCGAAATAGGGgggatttatgtatttactgcGCATATTTTGGCTTTTGCGTTTGCCAGCGTTACAGCTGTGTCGTACTTAAGTGATGTTAGTTTACTGTTTGCCTGCAATTGgctgtattcattttttgttattgttataatcTAAAGAGCCCGATTTTACGAATGACATTGGTCGCTCGCGTGCAGAAAACAGTATTggttaatgcaaataataaattagatgtaaaataaagtgttttctttttatcaaaCGCGTTCTTTATCTTCATGGAGGATAGTGGCTGATATGGGCTGCGGCTCGTAATGTGGGTTGGGTGTAGCGTTGTTCGATTCGCGAACGAGTTGTTCTTGTGAGTCGGTTCTTTTCATTGAATCGATACGAGAGGGTCTGTCGTTGACTTAATGGTAGAAGTTTTTTAAATGCCTCCTGGAAATGTATTTTCGACTTAATTATGTGGaaattgttaaaacaaaaacagttggATGTAAACCTGAAGCTAAGATTATAGTATCGTTTAATGTAACTGTAAATTTTATTTAGgttgtaaattattattgttttatgtaatgGCTGCAACGAACTTAATTTGAACACATACAATTGCAATAAACACAGCTGttaataaagctttaaaacatttgatagGCCTCGGTGGGCTGTCAGAGTGACGTAGACGAATCAGAAGAATTGGTTTTCGAAGCGCTCCATTAACTGCtcaaaagaaccgattcgcGGAAATGATTCGGACTTTGCATCACTAGTTGGGTGGGGTGACTCGCATCCATCCCAGTGTTTAACACGGAAGTCAAGGCAATGGATAGATGCACGCTGCCATGTCAactcatgaataaaaaaaaatggaaattcataTCCATGGCCGATTACAATAATGGTGTTTATCTGTGTAGGAATGTATTCTCTCTGGGATCATGTCTGTGAATGGAAAGAAAGTTTTGCATATGGACAGAAATCCATACTACGGTGGTGAAAGTTCCTCCATCACACCCCTGGAGGAGCTCTATAAGAGATTTGGGATTTCAGACAGCCCCCCAGAGTCAATGGGCCGGGGAAGAGACTGGAATGTGGATCTTATTCCTAAATTTTTAATGGCCAATGGTCAGTTAGTTAAGATGCTTCTATACACTGAAGTGACCAGATATCTTGACTTCAAAGTGGTCGAGGGAAGCTTTGTGTATAAAGGAGGAAAAATCTACAAAGTGCCCTCTACTGAGACAGAGGCACTGGCTTCAAATCTAATGGGAATGTTTGAGAAGAGACGCTTCCGCAAGTTCCTAGTTTTTGTGGCCAACTTTGATGAGAACGACCCCAAGACTTTGGAAGGTGTCGATCCCAAACTCACAACAATGGGAGACGTGTATAAGAAGTTTGACTTGGGTCAGGACGTCATCGACTTCACGGGACATGCCCTGGCGCTCTACAGGACAGACGAATACCTTGAGCAGCCGTGTCTGGAGACCATCAATAGGATCAAGCTCTACAGCGAGTCTCTGGCACGCTACGGGAAGAGCCCATACCTGTACCCTCTGTACGGACTGGGGGAGCTGCCTCAAGGGTTCGCTAGGTTAAGTGCAATTTATGGAGGAACCTACATGCTGAACAAGCCAGTGGACGAGATAGTGATGGAGGGAGGACACGTGGTGGGCGTGAAATCGGAGGGAGAGGTTGCCCGTTGCAAGCAGCTCATCTGTGATCCTAGCTACATCCCGGACCGCGTGCACAAAGTCGGACAGGTGATCCGGGTCATCTGCGTCCTCAGCCATCCCATTAAAAACACTAATGATGCCAATTCCTGCCAGATCATCATCCCTCAGAACCAGGTTAACCGCAAATCAGATATCTATGTTTGCATGATGTCCTACGCCCATAATGTGGCGGCCCAGGGAAAGTATATCGCCATCGCAAGCACCACTGTGGAAACCTCTGATCCTGAAGCGGAAATCGAACCTGCGCTGGAACTCCTTGAGCCCATTGACCAAAAGTTTGTGGCCATCAGTGACATGTATGAACCCACAGATGACGGTACAGAGAGCCAGGTTTTTGCATCACGGTCCTACGATGCCACCACTCATTTCGAAACAACTTGTAACGACATCAAGGACATCTACAAGCGCATGACAGGCAGTGACTTCGATTTTGAGAACATGAAGCGTAAACAGAACGACGTCTTTGGCGAGGACGAACAGTGAGGGGTGGACAAGTGACGGAGGAGTGGAGAGGCAATGATCAGATGGAGGGAGAGATGAGGCGGGCTGAACGGGATTTACCTGACTGGGTTCAGAAGGGACGCAGAACTGATTCGACAACGCTGTAAATCTCTTTCAACCGACCTTATCTTTTCCCAGAGTGCTCTTTGCTCATTGTCTCCACACCCTCCGGTGTCTCTGTTCAGATCCTAACAGCtcagcacacagacacacaaacgcTCTATCGCTCACATTCCACAACTCTGCACTACAAAGTGGGCTCACACCAACATGCTATTTTAGATTCTCACACAAGCAGTATGCATCGTTTGCGCAAAATATCCTGTTGAAGTGAAACACACGTCTTTCTGTTCTCTGAATATTGTCTTTGACCGAAGCCCATACATGTGAACGATTCCTCGAATATTGAAGGAGATTTAAAATCATCAACTTTCGTGAAGTATCCCCAACTGTCCCGAGACTGTTAGTTTAGCATACTGTCGTCACTTTTGACATTTAACGGCTTCGTGTGAACAGCAGCCTTCCTGTACTTGAGGAAAGTGTCACTGATATAGTAAGATCATCAAACACTACAGTTTGGCACCTTGGAAAAATGATGTAATGTGATATTGATAATAAACACTAAATTGTGCAAAAGCAAATCTGATTTTGCTAGATCCAGCAATCAAACCCCGAACTGACGAGTCTCATATCATTGCATTTCCTATTCACGATCTTTCCGCTCTTTTAACTACAgatatttaattcttttattattattattattattattattattattggtggatttatttttttttgacaactAAATTGAATGAGATGTATAATATGCAGTATAGAAGCGAACTGTAAGCCATTAACTTGTAACTAACATTACAGTCTTTGTGCTaactcttaaaaatatttctaacgTTTCGTCACAATTTCTAATGACCTGAAAACCGACACGGACGGCTGTTGTCGATCGCTTAGTCTGTTACGGGAAATGAGTCTTAAAGAGAATGTGGAAGCGATTTTCACTCCCACAGCTGCAGAGGAAAACGATAATGTGAATTTAATGAGTATCAGATCCTTTGGTATTTGATAGTAGCCATATCCGTTGGTAAACCGGGCTGACTCCAGTCTACTAAATGCATACATGCTCTAACTTTGACTTGTGATGAACACTATGCCTCCCCCCTGTGCACTGTTAAGATTCTCACTGCATCATGCAATCGGCCTGCGtctttgatttctgtttttatcgGTGATCGACACATGTAGTCTCTGCATTTACACCTGGCTGTTAGAAACCACAAGATTACAAACTTAGCATTGATCTATGACTGGTCATTTTCACCATTATATCTCTTAATCATGctcgtttttgttttgaaatgatttgAATTGCCATCAGTAGTTATAGTAGACGCTAGTCTGGAGCAGATGGTAATGGTgtgctgtttgaactctcactGTACAGCTTTCAGTGTAGAATATACAAGCATTCTCATGTTTTCCATACTCGCCTTTGCTGAGAAAAAAGCCTTTGACTGTagtccccctcctcctcctcctcctcttcctcctttctctttatttttaatgtaaaacaagGAGTGTGACAGTTTCATTACATTCTTGAATTTTATTGGGCCAAAGTCACTTATGGCCTTATAGATTCACATAGAAGCATAAAGGTCTTGAACTCTCTTCCTTATAGTGCACAAATTAGATTGTGAATTAATGATAACTGGAATCAAATAGAATTACGCTGCATTGCTATATTTGTTATCTTTTGCACCTTTCCAGCATATTGTCGCATATGTTTGGATTAACtgttttgtactgtatttattttcattttgtctttcattttcaatgttgaaacaactaaacaccttaaaaaaaaaactgacacacAAACTCGACAATTTTAAGTTGTGAATTTCATCTCGTGTTTGAGCAGTCTTgtgcaacaaaaataaatatgaacaaaatgaaactcAA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233838 lncRNA downstream 211260 14373720 ~ 14461017 (-) False G157906
TU233871 lncRNA downstream 228826 14383738 ~ 14443451 (-) True G157928
TU233835 lncRNA downstream 253982 14361166 ~ 14418295 (-) True G157906
TU233836 lncRNA downstream 274434 14373720 ~ 14397843 (-) False G157906
TU233861 lncRNA downstream 304648 14366559 ~ 14367629 (-) True G157920
TU233962 lncRNA upstream 5659 14684890 ~ 14702112 (-) False LOC122328902
TU233965 lncRNA upstream 5659 14684890 ~ 14702112 (-) False LOC122328902
TU233980 lncRNA upstream 5659 14684890 ~ 14691315 (-) True LOC122328902
XR_006247854.1 lncRNA upstream 151033 14830264 ~ 14830849 (-) True LOC122328920
TU234007 lncRNA upstream 157130 14836361 ~ 14845678 (-) True G157999
XM_043224565.1 mRNA downstream 35952 14624253 ~ 14636325 (-) True ada
XM_043224258.1 mRNA downstream 82655 14570347 ~ 14589622 (-) False fitm2
XM_043224257.1 mRNA downstream 92712 14570347 ~ 14579565 (-) False fitm2
XM_043224161.1 mRNA downstream 102619 14564464 ~ 14569658 (-) True LOC122328465
XM_043225371.1 mRNA downstream 108477 14554814 ~ 14563800 (-) True senp1
XM_043224970.1 mRNA upstream 6560 14685791 ~ 15187907 (-) False LOC122328902
XM_043224976.1 mRNA upstream 6560 14685791 ~ 15185162 (-) False LOC122328902
XM_043224971.1 mRNA upstream 6560 14685791 ~ 15185157 (-) False LOC122328902
XM_043224969.1 mRNA upstream 6560 14685791 ~ 15185155 (-) False LOC122328902
XM_043224973.1 mRNA upstream 6560 14685791 ~ 15185154 (-) False LOC122328902
TU233895 other downstream 82684 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 341493 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1389950 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1454869 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2747627 11922844 ~ 11924650 (-) True G156985
XR_006247853.1 other upstream 668186 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1020038 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1020038 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 1328875 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 1464602 16143833 ~ 16169834 (-) True G158288

Expression Profile