RNA id: XM_043224258.1


Basic Information

Item Value
RNA id XM_043224258.1
length 1960
RNA type mRNA
GC content 0.39
exon number 3
gene id fitm2
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14570347 ~ 14589622 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGTAACTCCTCTGCCTATTTTCCCCTTTGAAACTTCAAACTCCAGTTTGTGAACAAAGTCCTGTCTATCTCCACAATAAGGATCTCCGACCACTGACCAAACTCCATTTGTAACCACTGCCTATTTGTACTTTCTCTCCAATgactctttttcatttcacCTGTCTGACCAAATGGGAAGAACAAGTAGCACTACAAAGGTGGATGAGAAATGCACATGTTGGCCTACAAGGAATAACATGCTCTTGGAGTACTCGGGAATGTGTTTTACGCGGGAATAGGAGTGTTGCGCTTTCGTttgattttgaatatttgataGAAATGAATGGGAGAAGACGGCAGGAACATGCTTACAAAAGCTCATTGGAGGTCAGTAAAGCCTCTGTGGATTGACTGGGGTAGATGGCACAGATATGGTCGATTCTGAAAGCGACGGGCCTCGTGCCGGAGAGCTACTTCAGCAAtagcagaaatgttttaaatctatATTTTGTGAAAGTCTCATGGGGATGGACCATTGTTTTACTTCTGCCTTTCATCTTTTACTCCAACCTTTACAACAGAAGCCACACATTTGTGTTGAGGCGGCTGACCGCACTGCTTGTGGCAACAGTTGTTTGGTACACCTGCACTGAGACTTTTTTCTACATCGAAGATGTTACCGGTTTCTGCTATGAATCCAACAGTTTGCAAGTAATCCGTGGTGACATTACCACAAAGGCGGCGTGCAGGCAGGCTGGATTCATCTGGGATGGATTTGACATATCAGGACACTCCTTCATCTTGGCTTACTCTTCTCTCGTGATTGTGGAGGAAATGGTGCCCATGCTACACATACCCCAGAGTGACAGGAACATTTGTCTTAATTGTCTATATATAGCACTCAATGCGATTGTGGTCATCTGGATATGGATGTTCGGATGCACTTCTGTGTATTTCCATGATATTATCGACAAAGTTATAGGGACGCTGTGTGGGATATTAGGGTGGTACGTGACTTATGTTGTTTGGTACCCAATGCCTTTTTCCCCAGGTCTCCCTCCACAGCAGAAACAGCACGCTTAGTGTGAGAACTAAATACTtcaagtgcacttttttttaaagtcaatgACAGGTTAGCCTACCAAATGAGGCGGCAGGCAGCTGGTGTTCCTAAAATGACAATCTGTAAACTTGAGAGGTCACATCTGAATCTTATTGTTGCCTTCAAACATTTTGTGGCTTCGAACAGGGCTGAAATAGTAAACCTAGCTTATACGGTAGTCTGCTGCTGCTTTTTGTAATCAACCTTCAACCATCAGCTAAGCCGCCTTTTAACAAGCAGTTCTTCACGACactaatattttcaatatttgtaACTGGcctatttattgatttttaacaaaGAAATCTGATAAATTTGTGCGATTAGTGTAATGCAGTTGTGTAAATTGTAtatttgcattgtgttttaataGGACCGTTTTATGTgttctgttatttattcatacatgCCATTGTGCTATTGTTAGGTTGGCCTAGTCGTTTGCAGTTGTTGTTATTCCTCATGCCACCTGTTCTTAGAAACGCAAAACATCTGTAACATTTGTAATATAAGACCGGATTGATGTTTGAGtgataaattcaaataaataattggctGATTATAAGCACTTCTTACAGGTTTGAGGCACAATGCAAATTAGATATTATAAATTCATtccaaaatacaaacaatgGGACATGCTGGTTATGGAGGGCACATCCATTAGTCATTTCATGCGTGTCaattaaacatgattttagACAATTATCATCGCAATTATGTTTAATACATCAGTATTCCAAAGAATGCAGCATGTTATGATGTTGAAATATTGTACTGTATGACACTGAGTTCTCTTTAGTATAATAACACGTAACtgagttgtatttttatttaattactgttgtttgaaagaataaaaagctTTGACTTGA

Function

GO:

id name namespace
GO:0022604 regulation of cell morphogenesis biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0019915 lipid storage biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233838 lncRNA downstream 109330 14373720 ~ 14461017 (-) False G157906
TU233871 lncRNA downstream 126896 14383738 ~ 14443451 (-) True G157928
TU233835 lncRNA downstream 152052 14361166 ~ 14418295 (-) True G157906
TU233836 lncRNA downstream 172504 14373720 ~ 14397843 (-) False G157906
TU233861 lncRNA downstream 202718 14366559 ~ 14367629 (-) True G157920
TU233937 lncRNA upstream 61802 14651424 ~ 14729662 (-) True G157966
TU233962 lncRNA upstream 95268 14684890 ~ 14702112 (-) False LOC122328902
TU233965 lncRNA upstream 95268 14684890 ~ 14702112 (-) False LOC122328902
TU233980 lncRNA upstream 95268 14684890 ~ 14691315 (-) True LOC122328902
XR_006247854.1 lncRNA upstream 240642 14830264 ~ 14830849 (-) True LOC122328920
XM_043224161.1 mRNA downstream 689 14564464 ~ 14569658 (-) True LOC122328465
XM_043225371.1 mRNA downstream 6547 14554814 ~ 14563800 (-) True senp1
XM_043224624.1 mRNA downstream 45711 14428972 ~ 14524636 (-) False lrp1ab
XM_043224623.1 mRNA downstream 45711 14428972 ~ 14524636 (-) True lrp1ab
XM_043224951.1 mRNA downstream 276781 14286961 ~ 14293566 (-) True idh3g
XM_043224565.1 mRNA upstream 34631 14624253 ~ 14636325 (-) True ada
XM_043224382.1 mRNA upstream 82655 14672277 ~ 14679231 (-) True gdi1
XM_043224383.1 mRNA upstream 82655 14672277 ~ 14679230 (-) False gdi1
XM_043224970.1 mRNA upstream 96169 14685791 ~ 15187907 (-) False LOC122328902
XM_043224976.1 mRNA upstream 96169 14685791 ~ 15185162 (-) False LOC122328902
TU233846 other downstream 239563 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1288020 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1352939 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2645697 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2768715 11799922 ~ 11801632 (-) False si:dkey-93l1.9
XR_006247853.1 other upstream 757795 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1109647 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1109647 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 1418484 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 1554211 16143833 ~ 16169834 (-) True G158288

Expression Profile