RNA id: XM_043224447.1


Basic Information

Item Value
RNA id XM_043224447.1
length 4598
RNA type mRNA
GC content 0.43
exon number 9
gene id ccnt1
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18585124 ~ 18592854 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGtgagattttaaaacattgtccTTCTCAGTAATGGCGGCTTCGTTCCCTTCGCTTTcgctaaataacaataaatggtACTTCACGCGCGAACAAATCGAAAACAGTCCATCTCGCCGAGCGGGACTTGATCCCGACAAAGAGCTCTCGTACCGACAGCAAGCTGCTAACCTGCTGCAGGACATGGGACAGCGGCTCAACGTGTCGCAACTTACAATTAACACTGCCATTGTGTATATGCATCGGTTCTACATGATCCAGTCCTTCACTCGCTTCCACCGGAATGTGATTGCTCCTGCAGCTCTCTTTTTAGCCGCGAAGGTGGAAGAACAGCCCCGCAAGCTGGAACATGTGATTAAGGTGACCCATGCGTGTCTCAATCCTCAGGACCCGTCACCAGACACCAGGAGTGATACATACCTGCAACAAGCCCAAGACCTGGTCATTCTTGAGAGCATTATACTCCAGACCCTGGCTTTTGAGATCACCATTGATCATCCCCACACACATGTTGTCAAGTGTACCCAACTTGTGCGAGCGAGTAAAGACTTAGCTCAGACCTCATACTTCATGGCAACAAACAGtcTCCACTTGACTACGTTCTGCTTGCAGTACAGCCCACCCATAGTAGCTTGTGTTTGCATTCATCTGGCCTGCAAATGGTCCAACTGGGAGATTCCAGTTTCCACAGACGGCAAACACTGGTGGGAGTATGTTGACCCCACCGTGACCCTTGAACTGTTGGATGAGCTCACTCATGAGTTCCTGCAGATCTTGGAGAAGACGCCCAGTCGCTTAAAACGCATAAGAAACTGGAAAGCTGCTGGTCAGACTGCCAGGAAATCAAAAGTACAAGATGGTGATCAGTCCGAAGCCATCATGAATATGATCTCTATGGCATCGGCTGACAGTACATTGGCCGGGCTGATGAGCCTCTCCGCCCCACCCTCCGGTTCCTCTATGGACGACTCAACCGATGACCACAGTGCTGCTCCCTCGTCCCAACACTGGCAGGCTCCTGCCAAGGAGCAGCCCACCACCAACGAGCTTCACGCACCTGCCAAGCTGTCTCTGAGTGAATATCGGGTGAAGCACGCAGACGAGCTGGCGGCTCAGAAGCGGAAGTTGGAGAACATGGAAGCAAGCGTGAAACAGGGATACGCCACTGCCGCCCAGGCCCTCATGAACCAGCAGAGGAAGGAGAAGCACCATCACCACCAGCAGTCCAGCTCTAGTTCCTCAGACCTTAACAACCCCTCACCCATCGTCCTGAAGATCCCGTTGGACGAGCGATCGGAGCGCAGTTCCATAAAAATGCGCTTCCCTGTGCCAGGCCAATCAGGCAGCGGGGGGCACAGCAGCAGTAGCAGCAGTCGAGGATCCGAGCAGGACATTAAAGTTCGGATCCGAGTTCCGGAAAGGAGAAGCGGGTCTGGAGAAGATGGAAAGAGTCGCGAGAAGCATAGAGAGAGGTCcaaccaccaccaccatcatcatcaccatcaccaccaccactCCTCCTCGTCCGCCACTGGCTCTTTGTCAACATCGTCTTCCTCATCCTCAGCACAAAAGCATTCGAGTTCTGCCAGCGCGTCAGGAAGTAGCAAAAAGGTCTCAGGTGATTCTGTGCGAACGAGTTCTTCGTCATCCTCATCGCGAAAACGGACCCACTTGCCGGACCCTCCTTCCGGCAGCCATCCCTCGAAAGTTAGCAAATCGTCCAGAAACTCGTTTCAGTTGCCGACGCTTCCCGGAGTGCCCTCCCACGCGATGGGTCAGGGATCCGACATCCTTCCCTCGTTGAGTCTCTCGCACCATCAGGGAAACTATTCGCACTCCAAATCGGACAAAGCCGACACGAACGGACACAATACGGGCAGCCAGTCCAACGAATACCAGGACACTTTTGACATGTTGAACTCGCTGCTCAGTGCGCAGGGCGTTCAGCCGGCACAACCTCAGATGTTTGACTATCGCTCTCAGTACGGAGACTATCGGTATAGCAGTAGCGCTCGTGGAGGAACCCAGGCGCCACCTTTACCCTCAGAACCACCTCCACCTCTGCCGCCACTGCCCAAATAAACCCCTTTCAGCTCATCCGTCCACGTATGCTGATCAAATCAGTCGTCTTGGGAATCCTGGGTTCTTTTAGTGCATCTGACTTTGTGATATTGAGTTTGACAGCAGAGTAATGTAAGGCAAAAAATGTACCTGGTGAATCTTTGCCCTCATGTTGTCTTGCGTTTTGTGCGAGCGAGTGTGTTCACAACACCCATCTGTGGCAATAATGTTATAATAGaacaaaatattgcaaaaaaaaaaagcaaaaatgttatttattgaaaaaaattgtacataCTATTTTTGATGTTGCTCAGTTTTATATCAGCGCTAACAGAAAAGCATAATGGAATTAAGGGTATGTATTACTGAAAGAGAGGCACCCATTGTCCTCTTTAAAAAGTGtaactgaatgcaaaaaaaaaggaaaatgtttttgttttatgtatggATTTAAGTCTTGCTAACAATATATGTCTTTTTTATCAAGTATGGTATTTATTATTAGCCTTTTAAAACCATAGTTATTAGCAGTCGTTGCTTGAATGCGTCAGACGATAtctggatttatttttatactgttgTAACCTGCTTCCCAGTCTGTATTTACTTGATACGTCATGTATGTTTTGAGAATGGGCATACGAATCCCCAATATTTGCATCAAAATGTATGTTTCAAATATATGAATAGTCActgaagtaatgttttttattttgtttggtaaATATTTGtggtgtctttttcttttttctttttttttttttttttgtaaccttcAGCTTTGTATTAATTCTGTAAATtgactatttttacatttttccaggaaaaaaaaaaaaagaattttcgGGAAAGTGTAGACCTATGGTTCTAGATTCAAATTCAGATGCAGTCATTGTTTTAAATGGTTGTAGAATATCACGCTCCTATATGATACACTATTCACAACAGTATGTCCAGCTTGTGCTCATTTCAGTCTcgtatttaagttttttttatttcacaaaccCTAATGCTGTCATATGCAGgctatttgtcattttatgatGTAACTGACCTATAAATGGCCTTTAAACTTGAGTGAATATGAATCTGTGATGGGGAAAAATACAATCCAATGAATCTACTTTGTTTCTTTAGTTtaagaaaaacaattacaaCAGTGTAAGGTTTATTCTGTATGGGTTTATAAATGATTTCCCTCAAAATTGTGATACTATTACCCATCATAGCTTCAGTTTTTTGAtgttaaaggggtagttcatcgaaaaaatgtaaatcctgTCATTTGCACACccttatatttgatttaatacacacaaaagtacacaaaagtaattttttccaTATAATGAAACTCTGTAGGGGTTGATGTTTGTACTCCAAAGTatcttcatttttggatgactgtctctttaaataagCCGTGTCTTCTAAGGTCTGTTAGGTATTTGTTATCTGTCTGTATTTGAACACTCAAATTGTCCCTTGCAAAGCGAAAGGCCGAAACGCTGACcgcttttgtttatttgttgtaataCCTCCATTTATGTTCCACCTTGTGCATcaaggtcattttttttgtgtttgggAATGACAGTGATAAGCCATCCGCTCCTGATTCACGAAATTAAAACTAGTGGGATCTTAAATGTTGCTTTGTACCTTTAACAAGATTGTCTCCATATTCATATCTtgcttgtttatgtttttgcacGCAGTTATTAATGCGGTCTGTCCTGAATTAATGGCATGACTTTCATCGATCattaacagacaaaaaaaaaagtagaagcATGAAATGGAGTTTCTACTGTCAGagaaaattttactttaataaatgttGCGGTCTTTTAAAAAAGATGTAAGCAGGGATTCCGCCGTACTTTAATCGTTTTGCTGAATGTGCCTGTTGAACGTTTCGGGAACATTGTGAAATGATATGAAACACACACTATAAGCTATAAAAGATCTGTTTTGGCATATATTCCCTATATGATGCACTCCTCGTTTCCCGTCCCTGTTTTAAGTAGAACCTGAAGGTTTACCaccatgttttagttttgtgtttggTTCAGTAAGACTGAAGAGAAGGCGTTCTGTGGGTCTAATGCAATTCATGTCACCACTGTATTTTCTATGTACCTCCGTCTCaagaatataacattttatcaaatgtatatactgttttctgtgttttagtgGTACCACATGAACTCTCAggttttgaattgaattgttgGGGTGTTTCTTGTCAGAAGTTAAGGTTTGCATTTTTGTGAACTTGGTTCCTTTTTATAAATGTGGTTGATGtacaataatgttttatgaGAAACATACTTGTGGGTGTTTTTCTTACCGATTGCAgtgtaaattgtaataatgtgaCAGACGTTCTACCCATGCTTCTTGCAGTAAATTcacttttcagatttttatacGACAAATTGACCAGTTTTGCTTCCACCTGATGTCAACACCTTCATGGTTTGCCTTTGAATTCAGTGCTGGAATAAAGAGATACAAGAATAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235375 lncRNA downstream 21982 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA downstream 21982 18559420 ~ 18563142 (-) True G158980
XR_006247816.1 lncRNA downstream 128618 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA downstream 142645 18440650 ~ 18442479 (-) True G158984
TU235355 lncRNA downstream 234777 18342361 ~ 18350347 (-) False hoxc6a
XR_006247881.1 lncRNA upstream 20822 18613676 ~ 18615145 (-) True LOC122329081
TU235489 lncRNA upstream 49408 18642262 ~ 18644584 (-) False G159048
TU235490 lncRNA upstream 49408 18642262 ~ 18644688 (-) True G159048
TU235492 lncRNA upstream 49408 18642262 ~ 18644074 (-) False G159048
TU235500 lncRNA upstream 55233 18648087 ~ 18648625 (-) True G159052
XM_043224448.1 mRNA downstream 1092 18579092 ~ 18584032 (-) True pmelb
XM_043224450.1 mRNA downstream 14286 18568172 ~ 18570838 (-) True LOC122328643
XM_043224453.1 mRNA downstream 14350 18564062 ~ 18570774 (-) False LOC122328645
XM_043224452.1 mRNA downstream 17837 18564062 ~ 18567287 (-) True LOC122328645
XM_043225347.1 mRNA downstream 39631 18535712 ~ 18545493 (-) True gdap1l1
XM_043225284.1 mRNA upstream 31534 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA upstream 31534 18624388 ~ 18637498 (-) False acp1
XM_043225327.1 mRNA upstream 60598 18653452 ~ 18666191 (-) False si:ch211-225h24.2
XM_043225326.1 mRNA upstream 60598 18653452 ~ 18666188 (-) True si:ch211-225h24.2
XM_043224665.1 mRNA upstream 221903 18814757 ~ 18829293 (-) True si:ch211-236h17.3
XR_006247822.1 other downstream 349588 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 537246 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1241739 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1405345 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2226419 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 154537 18747391 ~ 18754712 (-) True G159076

Expression Profile