RNA id: XM_043224448.1


Basic Information

Item Value
RNA id XM_043224448.1
length 2180
RNA type mRNA
GC content 0.44
exon number 12
gene id pmelb
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18579092 ~ 18584032 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGAGTGACGCCTCTCAAGCTGAAAGTCATTAAGGTGCTAACAACAAACTGAAACAATGAAGCTACTATCAAGAATACTGATACTGACCTGTCTGTCTGTGGCCTTAACAAGGCAATTCGACAGAAGCAACTCGAAATCCAGATTCAATCAATATCAGACATGGAATACAAAACGGTTCCCAGTGTGGAAAGATGGAGACCCACGCTACAAAAACAGCTGGACAGGTGGACAGCTGAAGTTTGACGTGGGAAATGATGCACCCACTTTGACTGGCGCCAAAATCACCTTCACCATTGACATTGTGTTCCCTCACAACCAGAAGGTCCTGCCGGACGGTCAAGTAGTTTGGGCAAAAAACTGCACAATAAATGGCACACGGTTCCACGAGGGTGAGCCTGTCTATCCTGCGGAGAACTCTGCAGATGAATGGAACACTGTGTTCCCTAACGCTCCTCTACTTTCAAGACAAGGGGACAAGCCACCTCCATATGTGTTTGTATGGAAAACCTGTGGTAAATACTGGCAGGTGTGTGACGGCTCTTCCTCATCATTAACCATCGGAACGGATGACGTTCCTCTTGGCTCTTACATGATGGATGTTGTCATTTATCACTATAGGCAAAAAGAGAAATTCATCCCTATTGGATATGCATCCACACAGTTCAGTATCACCGACCAGATTCCCTTTGCGGTTTCCCTGACGCAGGTGAATGACAAAGAAGAAGGTGATCAGAAATTCATCCAGAACAAAGCAGTGGCCTTCAGCATCACCCTTCATGACCCCAGCCAATACCTGAGCAAATCAGACGTGACTTTTAACTGGAACTTCGGGGATGGCAGTGGCACTGTGATCTCCAGAGAGCTCACCGTCACTCACACCTACATTACAGCCGGAGCTTTCAAGCCCCAAGTCGTCGTACAAGCAGCTATTCCGGATTCATCTTGTGCCACTCCACCAAACCTTCCCACTGAGGCCGGTCCGTCCATCAACACCCTCACCTCTGAGAGCCCCATCCGCCTGAATCAACACATCACTGCAGATCATGCTGCCAGTATGTCTCCCATTCAGAAATTCAAACCTGCATCTACAATGAAAACTTTCCCATCCGAACCTACTAATGGAGTTCCAACAATATCCAGCCTTAAGAAGGTCTTTGATCTTAGATCTGCATCAGAGACGTCTGAAACTTTGAACACTGCAACAAAGGCGACTGCCGCTGACGTGGAGGCGTCGATGGAGGATGACTTTGAAAACCAGGCCCATGTATCAATAATAAAGCGTCAGGCTCCTAACACAAACTGTATGATTTACCGCTACGGATCCTTCTCCACTGATATTGAGATTATTGAGGGCATTGAGAGTGTGCAGATCGTCCAGGTGGATGTAGCTGATGGTTTTCTGCTAACGGAGATGGAGCAGAATGCTGTTGATTTCACTGTTTCCTGCCAAGGAAGCCTCCCTACTGAAGTCTGCACTGTGGTATCGGATGCTGACTGCCATGTGCCAGTTATGACCATCTGCAATGCTGTTAGCCCCTCCACAGACTGCCAGCTCATCCTTCGACACTACTTCAATGACTCTGGGATCTTCTGTGTCAATGTGTCAATGACGAATGACGTCAGTCTGGCTTTCACAAATGCCAGGGTTAATATTAACCTAGCAGATTCCAGGTTGACATCTGCAGGTGCCGCTGCCCTTTTGTTGGGCATCCTGACCGTCATATCAGCAATGGGTGCTGTGGCTTTTGCGTATAAGCATCTTAAAGGGTATCAAAGGCTGAATGAGGATCCTGCTGCATGGCAATCCAAAGACACTGGCGTGAGCTCAATGCCGGCGTTTTTCTGGAGCCTAATGAATCAGAATACTGCAGATCAGAAAAAAGGAGTAGTGTGAATTTTCCTTTAAAACCATCACAATTcaaattttatgttatattagtaatattttgaaaaacgtaaaaaattttttttttttttaattttattttaatctttaatatttgaattgagattttgtattctttttataCACATATTTGACCCCAAATCCGTTTTCTACAAAtgatttcattacattacattacacaaaATTTTGTATCgtgattttaaattgaaaaaaaagaagctggccaacaagcattttttttaaccaaatgaataaaatatcacaaaagcTGC

Function

GO: NA

KEGG:

id description
K17304 PMEL, SILV; melanocyte protein PMEL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235375 lncRNA downstream 15950 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA downstream 15950 18559420 ~ 18563142 (-) True G158980
XR_006247816.1 lncRNA downstream 122586 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA downstream 136613 18440650 ~ 18442479 (-) True G158984
TU235355 lncRNA downstream 228745 18342361 ~ 18350347 (-) False hoxc6a
XR_006247881.1 lncRNA upstream 29644 18613676 ~ 18615145 (-) True LOC122329081
TU235489 lncRNA upstream 58230 18642262 ~ 18644584 (-) False G159048
TU235490 lncRNA upstream 58230 18642262 ~ 18644688 (-) True G159048
TU235492 lncRNA upstream 58230 18642262 ~ 18644074 (-) False G159048
TU235500 lncRNA upstream 64055 18648087 ~ 18648625 (-) True G159052
XM_043224450.1 mRNA downstream 8254 18568172 ~ 18570838 (-) True LOC122328643
XM_043224453.1 mRNA downstream 8318 18564062 ~ 18570774 (-) False LOC122328645
XM_043224452.1 mRNA downstream 11805 18564062 ~ 18567287 (-) True LOC122328645
XM_043225347.1 mRNA downstream 33599 18535712 ~ 18545493 (-) True gdap1l1
XM_043225346.1 mRNA downstream 33600 18535712 ~ 18545492 (-) False gdap1l1
XM_043224447.1 mRNA upstream 1092 18585124 ~ 18592854 (-) False ccnt1
XM_043224446.1 mRNA upstream 1092 18585124 ~ 18592854 (-) True ccnt1
XM_043225284.1 mRNA upstream 40356 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA upstream 40356 18624388 ~ 18637498 (-) False acp1
XM_043225327.1 mRNA upstream 69420 18653452 ~ 18666191 (-) False si:ch211-225h24.2
XR_006247822.1 other downstream 343556 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 531214 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1235707 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1399313 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2220387 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 163359 18747391 ~ 18754712 (-) True G159076

Expression Profile