RNA id: XM_043224453.1


Basic Information

Item Value
RNA id XM_043224453.1
length 1559
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC122328645
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18564062 ~ 18570774 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGAACTGTAAGATTTCTCCGTCAAGAATCTTTTCTCACCCGGCCAAGCAACACTAACAGGAACAATGCGTGAGTGCATCTCTATCCACGTTGGTCAAGCTGGAGTCCAGATCGGCAATGCCTGCTGGGAACTCTATTGTCTTGAGCACGGCATCCAGCCGGATGGACAGATGCCCAGTGACAAGACTATTGGAGGAGGGGATGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCTGGAAAGCACGTCCCCAGGGCTGTGTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGCACTGGTACATACCGTCAGCTGTTCCACCCTGAACAGCTCATCACTGGAAAGGAAGATGCTGCCAATAACTATGCCCGTGGTCACTACACTATTGGAAAAGAACTCATTGATCTTGTTTTGGACAGAATTCGCAAATTGGCTGACCAGTGCACAGGCCTCCAGGGTTTCCTGGTGTTCCACAGCTTTGGTGGTGGAACCGGTTCTGGCTTCACCTCTCTGCTGATGGAGCGTCTGTCTGTGGACTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCCGCTCCTCAGGTTTCCACTGCTGTGGTAGAGCCTTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTAGACAATGAGGCCATTTACGATATCTGCCGTAGGAACCTCGACATTGAGCGTCCTTCTTACACCAATCTCAACAGGCTGATCAGTCAGATCGTGTCCTCCATCACAGCCTCCCTCAGGTTTGATGGTGCCCTCAATGTTGATCTTACAGAATTCCAGACCAACTTGGTGCCCTATCCTCGTATCCACTTCCCATTGGCTACCTATGCCCCAGTGATCTCCGCAGAGAAGGCTTACCATGAGCAGCTCTCTGTGTCCGAAATCACTAATGCTTGCTTCGAGCCAGCAAATCAGATGGTGAAATGCGACCCACGTCATGGCAAATACATGGCTTGCTGCCTGCTGTACCGTGGTGACGTGGTGCCCAAAGACGTGAACGCCGCAATCGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTGTCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTTCCAGGTGGGGATCTGGCTAAAGTGCAGAGGGCTGTGTGCATGTTGAGCAACACCACAGCTATTGCTGAGGCCTGGGCTCGTCTCGATCATAAGTTCGATCTGATGTATGCCAAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGTATGGAGGAGGGCGAGTTCTCAGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAAGATTATGAGGAGGTTGGGGCTGAGAGTGTGGAAGAAGATGAAGGTGAAGAATATTAGAAATTCTTTTGACTTCCACTACCTGGTTTCCTGTCCgttgtcatttttgtgtgctGCTTTTCCTCACTTTCCAGTTGTCATCTGGTTAAAAGGtcaatctttaattttttttttcttggaaagaaaataaaatgttatgatatTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235375 lncRNA downstream 920 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA downstream 920 18559420 ~ 18563142 (-) True G158980
XR_006247816.1 lncRNA downstream 107556 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA downstream 121583 18440650 ~ 18442479 (-) True G158984
TU235355 lncRNA downstream 213715 18342361 ~ 18350347 (-) False hoxc6a
XR_006247881.1 lncRNA upstream 42902 18613676 ~ 18615145 (-) True LOC122329081
TU235489 lncRNA upstream 71488 18642262 ~ 18644584 (-) False G159048
TU235490 lncRNA upstream 71488 18642262 ~ 18644688 (-) True G159048
TU235492 lncRNA upstream 71488 18642262 ~ 18644074 (-) False G159048
TU235500 lncRNA upstream 77313 18648087 ~ 18648625 (-) True G159052
XM_043225347.1 mRNA downstream 18569 18535712 ~ 18545493 (-) True gdap1l1
XM_043225346.1 mRNA downstream 18570 18535712 ~ 18545492 (-) False gdap1l1
XM_043224736.1 mRNA downstream 56321 18456925 ~ 18507741 (-) False rarga
XM_043224737.1 mRNA downstream 56657 18456925 ~ 18507405 (-) False rarga
XM_043224738.1 mRNA downstream 85603 18456925 ~ 18478459 (-) True rarga
XM_043224448.1 mRNA upstream 8318 18579092 ~ 18584032 (-) True pmelb
XM_043224447.1 mRNA upstream 14350 18585124 ~ 18592854 (-) False ccnt1
XM_043224446.1 mRNA upstream 14350 18585124 ~ 18592854 (-) True ccnt1
XM_043225284.1 mRNA upstream 53614 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA upstream 53614 18624388 ~ 18637498 (-) False acp1
XR_006247822.1 other downstream 328526 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 516184 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1220677 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1384283 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2205357 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 176617 18747391 ~ 18754712 (-) True G159076

Expression Profile