RNA id: XM_043224665.1


Basic Information

Item Value
RNA id XM_043224665.1
length 3143
RNA type mRNA
GC content 0.44
exon number 3
gene id si:ch211-236h17.3
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18814757 ~ 18829293 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAATGCCTTCCATCTTAGGGGAAGTCGAGTGTTCAACTGACAACATGTGACGTACCGAAGACATGTAGGTGATCAATGGACTGGGTTTCTTTTCGTAATTTACGCGACCGCTTGGAAAGCGAAGGCTCGCTGAGTCGGACCCGTGAGGTTTTTTTGGGTGAATGGTTCCTGTAACACCCGACTATAAAGCGGTCTGTTCCAGGGTAGCGTTAGACAAACGGACTGCTGCGGCTAAAGCGTGTATCGGAATTAGTTCACGCCGACTTGTTTTCTGCactctttttgtgtttctttgtaAAATGAGGAACCCGTTGGACAGACGCTTTTAGGATTGTTCTTCGGCGACAACAGCCCTTCTCGGACCTCCGTCGCCGGGCGAGAGTCAGGCATCGTCCGTTAGAGGAGTATCAGAATGATAAAGCCCAAAGTGGGTCGGATGTTTCTGGCGACATGCGTCGGCTCGTTTTTCATTCTTATATTATACTTCCAGAACATCTCAAGATCAGCTTCTGAACAGATTTCGGGCCCGAACAGTTTCTCAATTAAATCGGGAAGAAGTCCATTGCAGACACTACAAGAAAATGACCAGCTGGAGCAGTCTGCAGTGCAGGCCACTCTGCAGGGTCGAAGGGAACTCCTGGAGGAAACCTGTCACACCCACACCCGCAAAAGACGGGTACTCGGCCCAGAGGACCTCCGCCACCTCATAGTGGACGATAAACACAAGTTATTGTATTGCTATGTCCCCAAAGTGGCGTGTACAAACTGGAAACGTGTGTTGATGGTGCTAACAGGAGATGGACGCTATCGCGAACCACTGGCTATTCCGGCAAATGAGGCTCACGTAGCGGGCAACCTGCGTTCGCTCTCAGAGTACTCCACAGCTGAGATCAACAAGCGCTTACGCACATATCTGAAGTTCGTCTTTGTGCGCGAACCCTTCGAGAGACTTGTCTCGGCATATCGCAACAAGTTTACCCGCAGCTACAACACAGCCTTCCATAAACGCTACGGGACCAAAATCATCCGGAGGCATCGTGCGGACCCCCAGCCTGAAGCGCTGGAAAAAGGCAACGACGTCTCCTTCGAGgaatttgtgtattatttagtAGACCCCCAGACTCAGAGAGAGGAACCATTCAATGAGCACTGGGAAAGGGTTCACTCGCTTTGCCACCCTTGCTTGATTCATTATGACGTGGTGGGTAAGTATGAGACTCTTGCGCAAGATTCCCGCTACATCCTGAAGTTGGCAGGTGCCGAAGGAGAGGTCAAATTCCCGACCACGTCCAAAAGCACCAGGACCACCGGTGACATGGCTGCCAAATTATTCGACAATATCAGTCCGTTTTACCAGAAAAAACTCTTCAACCTTTACCGAATGGACTTCTTGCTTTTTAACTACTCTGTGCCAGCATACTTGAAGTTGAGATGAAGGTTTCAGCAAGTTTCAACTCCTCCATATCGTAGGTCTTGCGGGCACTGTTGCTTAAACTTTCGTTCTTGTGTCTGGATTCGAGTGAATTTCCTGAGGGAACCTATAGAGGATGCGGCTTGGATATGGCATCACCCTCGCTCCCTCGAGGTTAAATTCAGCATTCTAAACAGATAAGTGCTGGCTGGGGTGTTGCATCCCATCTCAAAAGTCCACTAAATAATGTCTGTAATTCCTCTGGCTTTAATAACTTGCGACCGAGCTCCAAGTATGTGCCTTTGTCCTTCTGAATGTTGATAAGTGAAGCGGGATTCTTCATCATCAGATAAATGCTATGAATGTTTCATCTCTTTTAATCTTCACCACCCAAAAGGATATTTATGGTATTGTTTACGTAGCATATTTATTGAGGATTTTGCTCTTGAACTGGAACCAGCAAAGCCTTGACTTTAATCTCGGAGAGATTCCTTGAAGCTGATCTCAAAGCCTCCTTTTTAACATTCCCTGGATATGATTTCAGACCTTAACCTTACTCCCAATCACAAAAGTAGTTTCCAAGTCACAAACTTTCAGCTGTTTCAAGCAGATAGCTGGTACCATGTTGGAAGGTGTCGAGGGTAAGAGGTGAATTTTCGACTTCTCCTGCCTTTGCAAACTTGACAAGGCTGTCTACCTTGGCCGGTTCAGCTACTCTGGAAAGAAATGGTGTTCTCACAGAGTCACCCCTTTATTTATCATGCAACGGGCTGGGTAAACAGTGCATAGCTGTGGCTGGAGAAAGGTGGACCCTCATCAGTGCAGCTCTTGTTAAGCTATAGATGCAGGGAGAAGTGCAAACTACTCACTGGGCATTGCAGGTCAAACATCAGCATGATCCTGGGAGGAAACACTCGTCTTATGAATTTATAATAAGGGTTGAAGTgcaataaaggtttttaaagagGTACCAGTGTGTGCTTTGAGGATTATCTATCCCTTAGAACTGTtaaggtgagaaaaaaaaatcaatcccTGACAGTACAGTTTAACGTCTTATTAGTTTTCACGACTTTTCTTTTGGGTCATTAACATATGGTTGAAATGACCCTTAATAATTTAGGTATTTCTTCTTGTCTGCGAAAAAGGCTAATGACTCGTTTTTATGGttgaaatgatgaaatatttagAGAAAGAAGGAGTCTGATTAATATCTGGCTGACAGGCAGACATGTCCTGGTGCACAGTGGGTACCTTGTGTGCCACATTGCATAACGAACCTTCCCAAATTACTCttggaaatgttttgttggaaaatattttttatctaaCTAGTTAGGCTCTATTTCAGTGTTGAGCTGGAATCTTGCAGCCTTTCACAAGGACAAAAGGAGTCAGTTTATAATAGATTTCAATGggcaatatatttaataatttgaagaGGGACGTCATGTCTTGATTTTAAAGTTACAGGAGTGTTTTTGTTCTGTCATTATTCTTAGGTAAAATTCTGAATGTTTAGTGGATGATTTATATGAGAAATGTGAGTGTGGGAAAGCCTTTCACTGTATGAGCTGAGCTGAGCTGTTGAGAGTGTGGCAACAATACGTGCCATTTATGATGTAACTAACAGTTTGCACCTGTTTTGAAAGCTTGTGGACATACATGTGGTGCAAAACTGTGAATGCCATTGTGCACTAggcagtatgaaaaaaaaaaaaacagggaatA

Function

GO: NA

KEGG:

id description
K01017 CHST11; chondroitin 4-sulfotransferase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235539 lncRNA downstream 50824 18763733 ~ 18763933 (-) True G159079
TU235504 lncRNA downstream 82941 18664402 ~ 18731816 (-) True G159054
TU235513 lncRNA downstream 134331 18679536 ~ 18680426 (-) True G159063
TU235505 lncRNA downstream 141991 18670515 ~ 18672766 (-) True G159055
TU235500 lncRNA downstream 166132 18648087 ~ 18648625 (-) True G159052
XR_006247783.1 lncRNA upstream 115757 18945050 ~ 18983664 (-) True LOC122328331
XM_043225327.1 mRNA downstream 148566 18653452 ~ 18666191 (-) False si:ch211-225h24.2
XM_043225326.1 mRNA downstream 148569 18653452 ~ 18666188 (-) True si:ch211-225h24.2
XM_043225284.1 mRNA downstream 177259 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA downstream 177259 18624388 ~ 18637498 (-) False acp1
XM_043224447.1 mRNA downstream 221903 18585124 ~ 18592854 (-) False ccnt1
XM_043224322.1 mRNA upstream 156659 18985952 ~ 19059410 (-) True LOC122328577
TU235534 other downstream 60045 18747391 ~ 18754712 (-) True G159076
XR_006247822.1 other downstream 579221 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 766879 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1471372 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1634978 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile