RNA id: XM_043225139.1


Basic Information

Item Value
RNA id XM_043225139.1
length 3134
RNA type mRNA
GC content 0.45
exon number 17
gene id tfcp2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17303211 ~ 17315390 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAGTGAGGAAGGCTACTGCGGATATTACGGCAATTTCTCTACAGAGTAGAAGAGATAAACAAACATGTAATATTATacggaagacatttttaaaatcaaaatccaTCCTGTCTTCATCCTGTGAAATTTATTCGAATTTTTCGCAGCGTCGTCACTTTTTACAGCGACCGGGGAAAGAAATTAATCTTCTTTCGAGCAAAACGAAGTTGTCTTCCCAACAGAAGGACGATGGGTGGAAAAATGGCGTGAAACGATGAGCTTTACCGCATTCTTTATCTGACTCCTGTCAGAGttgtctGTGATCATCCCTAAACCCAAAGGGAGACTGTCAGGACTGTGATTCATTTGCTCATAAGTTCACTTGAATTAGACGTCTAAAGTCATGGCTTGGGCTCTGAAACTACCTCTGGCCGATGAGGTGATAGAGTCTGGTCTGGTCCAGGACTTTGATGCCAGTCTGTCAGGGATCGGGCAAGAGCTTGGAGCTGGTGCTTACAGCATGAGtgatGTGCTAGCTCTCCCCATCTTTAAACAGGAGGAGTCGAATTTACCTCCGGAAAGTGATAATAAGATTCTTCCCTTCCAGTATGTACTGTGTGCCGCGACCTCTCCTGCTGTCAAACTACACGATGAGACGCTCACCTACCTCAATCAAGGACAGTCTTACGAGATTCGAATGCTGGACAATCGTAAAATGGGGGAACTTCCTGAGATCAATGGGAAAATGGTGAAGAGCATCATCCGCGTCGTGTTTCACGATCGCCGCCTTCAGTACACTGAACACCAGCAGCTGGAGGGCTGGCGCTGGAACAGGCCGGGAGACAGAATCCTTGACTTGGATATCCCGATGTCGGTAGGGGTGGTCGATCCCAGGGCAAACCCTACACAGCTCAACACTGTGGAGTTCCTCTGGGACCCCTCGAAAAGGACCTCTGTGTTTATTCAGGTCCATTGCATAAGCACAGAGTTCACCATGCGTAAACATGGAGGAGAGAAGGGAGTCCCGTTTCGTATTCAAATCGACACTTTCAAGGAGAACGAGGCCGGGGAGTATACGGAGCATCAGCACTCCGCCAGCTGCCAAATCAAAGTTTTTAAGcctAAAGGTGCAGACAGAAAGCAGAAGACGGACAGAGAAAAAATGGAGAAACGGGCACCgcaggaaaaggaaaaatacCAGCCTTCATATGAAACCACCATTCTCACTGAGTGCTCTCCGTGGCCTGAGGTAACATACGTCAACAATTCTCCATCACCAGGTTTCAACAGCTCCCACAACAGCTTTCCCGTGAACGAAGGAAATGGTTCACCCAATCACCAGCCGGAGCCTGTGGCACAGTTAGCAgatTTGTCGTCCCACCTACTTAGAAGAGACAGTGAAAGCAATCAGAATCTGTTGCCAACGGCAACGCCACAGGAAGCACAGCAGTGGCTCCATAGAAACCGTTTTTCACCATTCTGCCGTCTCTTCTCAAACTTCTCGGGGGCCGATCTGCTCAAACTGACCCGAGAGGATGTCATCCAGATCTGTGGGCCTGCTGATGGTATTCGGCTTTTTAATGCACTCAAAGGACGGGTGGTTCGTCCAAGGCTCACTATCTATGTGTGCCAGGAGTCTCAACAGGCTCGTGAACAGCACCAGAAACATGAGAACGGAGACGGGTCCAGCAACACTTTCTTCGTGTATCATGCTATCTATCTGGAGGAGTTAACAGCTGTGGAACTGACAGAAAAGTTGGCTCAGCTCTTCAGCATCTCTCCACGCCAGATCAGTCAGATCTTCAAGCAGGGACCCACTGGTATCCATGTGTTAGTCAGTGATGAGATGATTCAGAACTTTCAAGATGAGATGTGTTTTGTCCTGGACACAATGAAAGCTGAAACAAACGATGGCTATCACATCATTTTGAAGTGAAACAAAGGATGAGGGGGAGTGAACAGGCCCCTTATGTTTTTCTTAAGATTCAACCCACAGCCCCTTCACTGCACACTTCCTGGACCTTACCGAAGATCGCTTGGTTTGGAATAATAATGGAGACGGTCATGGGAAAGGAAAAAAGGCACCAGACCCATTTTGAAACCTTTGCTGTTTTATCCATGGAGCACATGCTGCCTTTATCCACCACTTTCCATTTACACTCgcaaaacaaatcacaaaattTCTATTTTACTAACTATCTTTACCTCAAGTTGCTttgccaggaaaaaaaaattataatgtgcTATGTACGACCTTACTGGCTCAAACTGAGAGAATTGGCTCgcattaaaaacagtattatttgttgttgtctGCCTGGATGTCACCCCCTAAGTATTTTAGCTGCATATGCTAGAGTCCCATGTGAAGTTCTGTCCACATGCCTCAATGAATACTTGCTTCATAAACAACATAAGTAGAAGGCGGCGTCACATGGTAGGACCAGAGATTTCCGGGACGCTTATGAAATTGTTCATGATGAACGTTATCATCAGTTAACTTCAGTAGGCAGTCTCCTTTTTATATTGTCCCCCTCGAAAGAATTCAGTTTGCTCTATACTGCCACTATTATCAAGTTCAGTTTGTCCTTTTGACAGGTTTACGGCGAGCAGCGTGTCTAACGCATTGCTGcttcaaatcatttatattttgtataagtTAATTGTTGATTTCTTAAGCCTTGCGGGCATGACTATGACTGTTGGGCATGATATTAGGTTCTGTAGCTTTGAATCCTGATGATTTTTCATGTGTTGCTGCAAATGCACGTTATTTACAGGCGGGAGATGAACGGCAGCAGTGGGCATTATATATGtgcatcttttcattttatttttttaacattgtgcTTAAAAAACCTCCCCCCCTTTCGTTTTCATCGTTGCATATACTAGAATAGTTTTTACAAATGTCAGACTTGCCAGAGCACTATTTTATGGTATAAAAGTTCATGTTTTACAttctttttgtttccttttggATATGACCACTTTCAGGTCGGGTAACGGGGAGAAACCTTGCACTGCGTGAGAAATGGTAGTCGTGGTTAGTGCTAGACGCAAACTAGACCAAGATGGTAAAGACGTGAGGTATTGTCTGTTGTGACCCTCTACCGTGTCATTGCaatgattaaaatgacttaCCTTGAAATAA

Function

GO: NA

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234890 lncRNA downstream 11668 17289971 ~ 17291543 (-) True G158605
TU234874 lncRNA downstream 77642 17152825 ~ 17225569 (-) True G158591
TU234861 lncRNA downstream 220527 17082207 ~ 17082684 (-) True G158587
TU234860 lncRNA downstream 220659 17082207 ~ 17082552 (-) False G158587
TU234706 lncRNA downstream 574868 16728101 ~ 16728343 (-) True G158484
TU234897 lncRNA upstream 18454 17333844 ~ 17335245 (-) True G158608
TU234920 lncRNA upstream 67952 17383342 ~ 17386554 (-) True G158628
TU234925 lncRNA upstream 78631 17394021 ~ 17395422 (-) True G158632
TU234910 lncRNA upstream 98313 17413703 ~ 17422305 (-) False coq10a
TU235009 lncRNA upstream 431140 17746530 ~ 17748502 (-) True G158706
XM_043223974.1 mRNA downstream 646 17294178 ~ 17302565 (-) True csrnp2
XM_043225102.1 mRNA downstream 45047 17214599 ~ 17258164 (-) True itga5
XM_043225101.1 mRNA downstream 118826 17176625 ~ 17184385 (-) False slc48a1a
XM_043225100.1 mRNA downstream 123379 17176625 ~ 17179832 (-) True slc48a1a
XM_043225099.1 mRNA downstream 127632 17171113 ~ 17175579 (-) False hrct1
XM_043225290.1 mRNA upstream 1238 17316628 ~ 17330887 (-) False pou6f1
XM_043225289.1 mRNA upstream 1238 17316628 ~ 17330887 (-) True pou6f1
XM_043225291.1 mRNA upstream 1238 17316628 ~ 17327965 (-) False pou6f1
XM_043225031.1 mRNA upstream 28712 17344102 ~ 17350948 (-) True bin2a
XM_043225030.1 mRNA upstream 38757 17354147 ~ 17361384 (-) True racgap1
TU234864 other downstream 123432 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 944506 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1059816 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1133377 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 1294296 16008106 ~ 16008915 (-) True G158231
TU234899 other upstream 23877 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 730548 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 916253 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 1432001 18747391 ~ 18754712 (-) True G159076

Expression Profile