RNA id: XM_043225284.1


Basic Information

Item Value
RNA id XM_043225284.1
length 851
RNA type mRNA
GC content 0.46
exon number 6
gene id acp1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18624388 ~ 18637498 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTGGAGCAGGCGGTAACTTGGGCAACCTTCAGCGGTGGCGCGGGGACCTATATTAGTGACCAATATGGCGACTCCCGGTGGAAGGTCGGTGTTATTCGTGTGCTTGGGGAATATCTGCAGATCCCCAATCGCTGAGGCTGTTTTCCAGAAAATGGCCAAAGACACTGGGGTGGTGGACAAGtggGTTATAGACTCTGGTGCCACCTCAGATTGGAATACTGGCAGCTCTCCTGACGCCCGTGGTCTGGCCTGCCTCAGGAAACATGGCATAGAGACAGATCACAGGGCACGACAGGTCACCAAAGACGACTTCATGACTTTCGATCACATCCTCTGCATGGACGAAAGCAATTTGAGAGATCTGAACAAGAAGGCAAGCACCGTGAAAAACAGCAAAGCCAAGATCGAGCTGCTCGGCTCCTACGATCCTGAAAAACAGCTTATTATCCAAGACCCATACTATGGGAGTGATAAAGACTTTGAGACGGTGTATGAACAGTGTGTGAGATGTTGCAAAGCCTTCCTGGAGCAGCACTcataacagacacacacacacacacacacacaagcacacacacacacactgcgacCATCTCCTGAAACCTGCTACGCCTCATCATAAGATGCTCGAACGTAAATATCCATTTGAAATAAGTGTCTTCATAAGCAAAGCACTCAAACCAAACAATAACAGCGTAGAGAGAAGCactttttgtctttaattgtaaaatacGTCGTGATGAAATGTCATATGATGCTTGTTTGAGCAACTGTAAACTGCTTTTGTTGACCATGCTCTCTGAAGAGAGTAAATTCACCAAAATAAACCAGCTGAAAATGCTAAAATCA

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003993 acid phosphatase activity molecular_function
GO:0004726 non-membrane spanning protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14394 ACP1; low molecular weight phosphotyrosine protein phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247881.1 lncRNA downstream 9243 18613676 ~ 18615145 (-) True LOC122329081
TU235375 lncRNA downstream 61246 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA downstream 61246 18559420 ~ 18563142 (-) True G158980
XR_006247816.1 lncRNA downstream 167882 18421859 ~ 18456506 (-) True LOC122328626
TU235396 lncRNA downstream 181909 18440650 ~ 18442479 (-) True G158984
TU235489 lncRNA upstream 4764 18642262 ~ 18644584 (-) False G159048
TU235490 lncRNA upstream 4764 18642262 ~ 18644688 (-) True G159048
TU235492 lncRNA upstream 4764 18642262 ~ 18644074 (-) False G159048
TU235500 lncRNA upstream 10589 18648087 ~ 18648625 (-) True G159052
TU235504 lncRNA upstream 26904 18664402 ~ 18731816 (-) True G159054
XM_043224447.1 mRNA downstream 31534 18585124 ~ 18592854 (-) False ccnt1
XM_043224446.1 mRNA downstream 31534 18585124 ~ 18592854 (-) True ccnt1
XM_043224448.1 mRNA downstream 40356 18579092 ~ 18584032 (-) True pmelb
XM_043224450.1 mRNA downstream 53550 18568172 ~ 18570838 (-) True LOC122328643
XM_043224453.1 mRNA downstream 53614 18564062 ~ 18570774 (-) False LOC122328645
XM_043225327.1 mRNA upstream 15954 18653452 ~ 18666191 (-) False si:ch211-225h24.2
XM_043225326.1 mRNA upstream 15954 18653452 ~ 18666188 (-) True si:ch211-225h24.2
XM_043224665.1 mRNA upstream 177259 18814757 ~ 18829293 (-) True si:ch211-236h17.3
XM_043224322.1 mRNA upstream 348454 18985952 ~ 19059410 (-) True LOC122328577
XR_006247822.1 other downstream 388852 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 576510 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1281003 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1444609 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2265683 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 109893 18747391 ~ 18754712 (-) True G159076

Expression Profile