RNA id: XM_043225327.1


Basic Information

Item Value
RNA id XM_043225327.1
length 2828
RNA type mRNA
GC content 0.42
exon number 3
gene id si:ch211-225h24.2
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18653452 ~ 18666191 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGGAGCGGCGGTCCAGGTGCTCTAGCCAACCGTGTGCTCAGACGTTCATCAGAAGAAGATAGTGGGCCGGAGGAAAGTGTGCGTGTGGGGTATCGCGAAGGGCAGGGCGCAATCACAGACGGGTTATTGTTCCGATTCAACCGCTGCCTCCTCGCGGTCTCCTCACCCAGAGTCTTCACTCGCATCCCATGGGCTTGGAAAATACCGTGCTTCTGAGATAGGCTACAGCTGAGCTCCCGTGCGCGTGCGATGTTTAAGAAGAGCAAGAGCAAAGTTCTGGTGGATGAAGCGTCGGAGGAGGACGACGTGTCGTGGCATCACGAGCGCGCGAGAAAGGATTCAAAGttgaaaaaagtgaaatcgAAGCGAGAAAAGGGAGACAAGAAGCTGTTTCCGTCTCAGGACGATGAGCACATCTTGCTGACAGGAGTCACTGTCTCTCACAGAAGAGGGTCTGCTAAGAAAAACTGGGAGGACGACAAGAGTAAAGCCAACCCAGAAAAAGACAAAGCGCACTGTCTGTGGGACAGCATCACAATGACGATGAAGCAGATCACACCCACGAGGAAGATCGACAAAATTGAGGGCTGGGAGCCGCCTCAGCTGAATGACGCCATGGAGGAGGTAAAAAACGAGCCGGAGAAGAAGAGGAGTGACTCTTCCCCGCTGTCCTCCCCTCTGTCACTGTCTCTGCCGCATTCTCTGGGTTTGCCATCCTGGGTTGGCTTGGGTTCGGAGGAGGACTCGTCTCGGTATGCTAGTCTGACTGAATCACAGACGGGCGGCCCTGCCCAGTGGGCGGCTCGGGCACGAGATAAATTAGCCGCCGTTCGTCGCCGAAGTCCAGCCAGCCTATCAGAGAGTAACTGGGAGGGGCTCAAATGATTCCATAATAATATCTGTGAGGATGGCCACACCCCCTTGTATACCAACTCTAATTGGACAGCCCACCGATGTGAAGAGTAGGACCCTCAGACCAAGAGTGCCTGCTTCCAACGCCTGTCAGCAATTTGTCACTTTTCCGTTTGATATAAACTGTGCGTCCAACTTTCGAATGGATCTCCTTCAGAGAAATCGctggatgcagttaatcaccTTGCTGTTTTGTACATGTCTTTTATAGcctttaaaagtgatttaaacaCTCAAAGGGAGACTTCAaccaaaaactgaaaatcatttattcaccctcacgTCATTCCAgatcttattaaaaataagttctTCAAAcctattttattaaacacacaaaagatGAAGATTAGCAGAATCCCAAGAACTAAGCCTCAGTCAGACGCCATATTGATGCCGTATAAACAAGGCTGTGAGGGACAGACTTTACTGTAGTATGTACTGTATACAAGCCGTACAGGTCATTCGAAACCGTTTTGAAGTTTTTGTCTGACAAACCCTTTTTAGAAAGACGTTTCGAAGGCCTAACAAGCAGCGTGTTTTTAAATAGCAgtaaaatactactactatCCCTCACTATTCAGTTTCCATCcatgttagaaaataaatatgacgcTATCCGTTCAAAAGACACGGTAGCTGCTACAATGGCAAcaaagtattataaatatactcTAAATTACAGTCCAGATATTATGTGAGAAACAGCCTATGCCGCTGAATACAGCAATAAGTCTTCATTCATCCTTTTCCAGTCACTGTATGAAAAGTCATGATATTCTGCTAAACGTCTCCTTTACacagaataaaatcattttggaTGACGTAAGGGTGAATTAACGACGATAGAATGTTAATTCGtaggtgaactgtctctttaaatccaCGTTTTATTAGCACACACTGCAGTACTCTTCATCACAGCCGTATACTCCTGAGGAGATCTCGATGGTTTTGTATGTAAAGCATGAATCTTCGATTCACTTGCGTCTGGTCGTTAATTTATTCCGCTATGTAGTTGAAAAGTGAATGTGAAACGATGTACAAACGCCTTCCACCGATCAGTGTAGATTTACTGCCTGCTGATTCACAATCATAATGTACTGTAATTACTCTATGCAATGATTTTCCTGCTGTAATCCCAAACTACTTGCCATTCATGCTTACAATTTATTCAACTTACTGTGGCTTAATAAGACATACAGGGAACCGTTTTAAATTGAGTGTGTGAGCTCGGTCCCGTCGCTGGAGCTTTAATAAAACAGATAATTAGTTATTGTAtccatttggggaaaaaaaggatcGAAACAGGTTGGATGAGTATCCATATTTCCTACGGTAACAATTACTGTTACGATATTTGAAGCCTTCCAAAGACCTCAATAGCTGTGCCGATTTATCATGAAGTATTGTTCTTCGCGTGCCTcgatttaaaattaattttgtagcGCGAGCGTGTTAACATGTTATTTTCTTCCATCACCCCCAACACAATAAAAAGGACAATCATCATTTATAAgtctaatataaaatgtattttacaaccATTTGGCCGCACCATTGAACTGCCCAAGATCTTTGTTTGTAAGAAGAACATGTCTAAGTGTCTTATTGCTGATTTTAGAAGATTATTTATAATCGGATTCTGAAAGTAAGTGGGTTTGCTGCTCTTGTTCATATAGTAGCTTTAAGTAATTAGTCTACCAATGTGTTTAACTTTGAAAGATGATTATAAATTGTTAGTTTGAGATTTTGCTCTTTATATTTGGGGCCTTTGTGAGAAtcttattttgatttttatctTGATACTACtgaattattactttttctgtattatgatttaaatgcaaataataaaatgacgtTGCAGGGGTTCAGATGAGTTGCTGAATCTGAATAAAAAGTTGTACTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235500 lncRNA downstream 4827 18648087 ~ 18648625 (-) True G159052
TU235490 lncRNA downstream 8764 18642262 ~ 18644688 (-) True G159048
TU235489 lncRNA downstream 8868 18642262 ~ 18644584 (-) False G159048
TU235492 lncRNA downstream 9378 18642262 ~ 18644074 (-) False G159048
XR_006247881.1 lncRNA downstream 38307 18613676 ~ 18615145 (-) True LOC122329081
TU235505 lncRNA upstream 4324 18670515 ~ 18672766 (-) True G159055
TU235513 lncRNA upstream 13345 18679536 ~ 18680426 (-) True G159063
TU235539 lncRNA upstream 97542 18763733 ~ 18763933 (-) True G159079
XR_006247783.1 lncRNA upstream 278859 18945050 ~ 18983664 (-) True LOC122328331
XM_043225284.1 mRNA downstream 15954 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA downstream 15954 18624388 ~ 18637498 (-) False acp1
XM_043224447.1 mRNA downstream 60598 18585124 ~ 18592854 (-) False ccnt1
XM_043224446.1 mRNA downstream 60598 18585124 ~ 18592854 (-) True ccnt1
XM_043224448.1 mRNA downstream 69420 18579092 ~ 18584032 (-) True pmelb
XM_043224665.1 mRNA upstream 148566 18814757 ~ 18829293 (-) True si:ch211-236h17.3
XM_043224322.1 mRNA upstream 319761 18985952 ~ 19059410 (-) True LOC122328577
XR_006247822.1 other downstream 417916 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 605574 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1310067 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1473673 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2294747 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 81200 18747391 ~ 18754712 (-) True G159076

Expression Profile