RNA id: XM_043235103.1


Basic Information

Item Value
RNA id XM_043235103.1
length 2309
RNA type mRNA
GC content 0.46
exon number 7
gene id lasp1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20296472 ~ 20309460 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGGCTGAACCTAAGACGAGATCAGCTGTAGTCATTTAACTCGCCGGCGTTCTTTTCGAATCCGCGAGAACGACGTTTCGAATGCTCAAGGATTCGAGAAATAACTCGAGAGCGAGAGAAAAGTCTTCCGCGGAGTGCCCTTGCACGGGCGCGCGCAGCAGGACACAGCGGCAGAGCGTGCGCGCGCCTTCCGCGTCTGATTGGTTCGCTGACAGTCAGCCAGCGGTGCAAACCGGACTTCATCAACGGACAGCGATCGGTATCAACCCAAACAGTGCTCTGCGGACCGGCTCCTCGTCTTATTGCGTCGCCGTACAATTCCTCCGAGATGAATCCACTGTGTAGCAGATGTAACCGAGTGGTGTATCCCACGGAAAAAGTGAATTGCCTTGACAAGtaCTGGCATAAAGGATGCTTTAGCTGTGAAGTCTGTAAGATGACTCTAAACATGAAGAACTACAAAGGCTTTGAGAAGAGACCATACTGTAATGCacacTATCCGAAGACTTCATTCACCAGTGTTGCCGACACTCCGGAGAACCTGCGCCTGAAACAGCAAAGCAAGATGCAGAGCCAGGTGCTCTACAAGGAGGAATTTGAGAAGAACAAAGGAAAGGGCTTCAGCGTTGTGGCTGACACACCAGAGCTGCAGAGAATCAAGAAAACGCAAGACCAAATCAGCAACATCAAGTACCACGAGGATTTTGAGAAGAGCCGAATGGGAGGGGAAGGCCCGCCTCTGCTTCCGCAAACACCTCAACAAAACACAACTCCAGcATATCAACCCTCGGCAGCATCTCCAAACTATCACTATGAGCCTGAGCCCGTGCGCCAGGCCGCTGCCGCCCCTCCTCCAAGCTCTGGGaagcgctACCGAGCGGTGTATGATTACACCGCCGCTGACGAGGACGAGGTGTCGTTCCTGGACGGCGACGTGATCATGGACGTGCAGCAGATCGACGAGGGATGGATGTACGGACGAGTGGAGCGCACCGGCCAGCAGGGGATGCTGCCGGCCAACTATGTAGAGGCCATCTGAACACAAATAGAGAAAGGGGGAAGggaggaaaaggaaaaagagggGGTTGCGGCAGAAAGACACAGATGATTTAGCCGAGTGCCATCTCACCTTTCAAGATCTCATCTTTTTCCCTCTTCTTTTCCTGCACTAACTGTCCTTGTCAGGGGTCGGCCTCTGTGACCCGGTTATGATCCAAAACAAACATAGTTCAGTACGTAATCATACACGGCAACAGCGCATACACGCACTCGCATAAATAGTGAATGATTTACTACTTCCACccatctttttctctctgtctattGCTTTTGCTGTCTACCTGTCTgactgttttgtctttttagtAAGTGTTTCCTCAGTCCTGGAAAGGTGCTGTCACAAGTGGCGCTTAAGTCTTAACAAGACTCTCATACACCAACcttcaaaaaaaacatgaccacATGGGCCTCTGAAATATTTAGGGTCCACTATAGAGCACTTCGCAGACATCTCAACACACTTATCTTATCGGTTGCTATGACAATTTGTGAAAGAATCTGGTCCGAACTTCagttgtcagattttttttatatattatatatatctattttcattgtttcttaTCTTCTTTGCAGCTTGTAATTGTAATGTGTCCAGTACAGTTTCACATCTCATCGGCTGTGGGTCTATGAGTAACGATTCTTGATCACGAGACTTCTGGTCATTCCAGTTTTCGCTCCATACGTCTGACCATGTGTTGGAACTGGAATATAGAAAAGGCTCCTCTTTTTCAACTGGACATTCCTAAAACTGTATGAAACGGATGGAGCCTTTTGATGCTTACATATTTACTTAAGCTCCTTCACATTCCTCTCTAGCCCTTTACAGAATTACTTCTAATATATGAGTGTCATTTTGTTCTGCAGctcttgcttttaaaaatgcgaGAAAATAGTGATGTATTTTGTTCTtcataaagggaaaaaaaaaagaaactatagTCACTTAGCAAGCGAGGAGCAGAGCAGCGTCGTAGAAAAATAGTAAGAGAAGAGAGGAGCCCAAGCACAATTCAATGGACCATTTTAGCTTTGGATTTTAATCATTCCATTTCGGTTCTGGAACATTCCATGTGCATTGTATCAAACTGTATCTCAGAGCTGTTCTGTAAAACGttgttattgatgtttttttgttttttcctcataTCATTGCTTATTCTCATTGCCTTGCTGGTATTGTACAAGACGGAATTTTAATGTCAATTTATCAATAtcagtggaataaaaaaatctatttgtatACCAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24420 LASP1; LIM and SH3 domain protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250526.1 lncRNA upstream 110946 20173694 ~ 20185526 (+) True LOC122342124
TU32179 lncRNA upstream 123470 20168636 ~ 20173002 (+) True G21652
XR_006250469.1 lncRNA upstream 135261 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA upstream 135267 20160436 ~ 20161205 (+) False LOC122341550
TU32079 lncRNA upstream 230596 20064960 ~ 20065876 (+) False LOC122341338
TU32184 lncRNA downstream 3835 20313295 ~ 20314144 (+) True G21655
TU32192 lncRNA downstream 30431 20339891 ~ 20345356 (+) True G21660
TU32193 lncRNA downstream 31612 20341072 ~ 20342296 (+) True G21661
TU32202 lncRNA downstream 84101 20393561 ~ 20393901 (+) True G21669
TU32204 lncRNA downstream 98332 20407792 ~ 20408327 (+) True G21671
XM_043235940.1 mRNA upstream 5995 20287163 ~ 20290477 (+) True arl5c
XM_043235198.1 mRNA upstream 11572 20254825 ~ 20284900 (+) False cacnb1
XM_043235199.1 mRNA upstream 11572 20254825 ~ 20284900 (+) False cacnb1
XM_043235200.1 mRNA upstream 11572 20254825 ~ 20284900 (+) False cacnb1
XM_043235201.1 mRNA upstream 11572 20265197 ~ 20284900 (+) False cacnb1
XM_043235443.1 mRNA downstream 6858 20316318 ~ 20320290 (+) True atp6v0ca
XM_043235622.1 mRNA downstream 12485 20321945 ~ 20327552 (+) True spsb3a
XM_043225682.1 mRNA downstream 18696 20328156 ~ 20331230 (+) True mrps34
XM_043229013.1 mRNA downstream 21874 20331334 ~ 20334050 (+) False nme3
XM_043229006.1 mRNA downstream 22483 20331943 ~ 20334050 (+) True nme3
TU32181 other upstream 108389 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 109274 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 188636 20106846 ~ 20107836 (+) False LOC122341546
TU32077 other upstream 228471 20064490 ~ 20068001 (+) False LOC122341338
unassigned_transcript_291 other downstream 4800 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 986242 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1328283 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1665792 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1667049 21976509 ~ 22025911 (+) False wnk4b

Expression Profile