RNA id: TU32184


Basic Information

Item Value
RNA id TU32184
length 594
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G21655
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20230015 ~ 20314144 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGACCGGCCCCGTTCACCGCCGGCTGCGTCTTTCTAGAAGAGCGGAGCGCAGCGGGCGGGGAGGGTCTCCAGAGCAGCGGACGCAGCCGACACCGACACCGAGCATCCTGCGCATCTTCTGGAGCCGTCATGCTGGATGTGCTGCTGTTGATGTTCTTCGCCATCATCGGCCTTGTGTTCCTGTCCTACATCATCTACATGCTCTGATCCCGGCGGCAGCGATGCGCCGCCGCGAGAGCGGGCGCGCGACGCACGCGGAGGAAGAAGCTCTGTCGATGGGGTCATGGCGTGAACGGACTGCAGGACGCGGGATATAGCTACATTTACAAGAGGAGACTTCACCCACCTCTGTGTCACACAAACACTGTCCCTATAGCATAGCagctgacacaaacacacacccatgTACTTGAAGTCAAGTATATACTAAACCACAAGATGGGCTGTTATTCgtctttttctgttcttctgtgtttttgtaagtAACTGTTTACAAGCTCCCGGTGTAATGGGCACTGTTATCACGTTCATGTATTTTGTCCAAGGATGTTCtgattttgaaaataaagagcCTTTGCGAGGATGAAACTGCC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250526.1 lncRNA upstream 127769 20173694 ~ 20185526 (+) True LOC122342124
TU32179 lncRNA upstream 140293 20168636 ~ 20173002 (+) True G21652
XR_006250469.1 lncRNA upstream 152084 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA upstream 152090 20160436 ~ 20161205 (+) False LOC122341550
TU32079 lncRNA upstream 247419 20064960 ~ 20065876 (+) False LOC122341338
TU32192 lncRNA downstream 25747 20339891 ~ 20345356 (+) True G21660
TU32193 lncRNA downstream 26928 20341072 ~ 20342296 (+) True G21661
TU32202 lncRNA downstream 79417 20393561 ~ 20393901 (+) True G21669
TU32204 lncRNA downstream 93648 20407792 ~ 20408327 (+) True G21671
TU32232 lncRNA downstream 166187 20480331 ~ 20518038 (+) True G21687
XM_043235103.1 mRNA upstream 3835 20296472 ~ 20309460 (+) True lasp1
XM_043235940.1 mRNA upstream 22818 20287163 ~ 20290477 (+) True arl5c
XM_043235196.1 mRNA upstream 28395 20254824 ~ 20284900 (+) True cacnb1
XM_043235198.1 mRNA upstream 28395 20254825 ~ 20284900 (+) False cacnb1
XM_043235199.1 mRNA upstream 28395 20254825 ~ 20284900 (+) False cacnb1
XM_043235443.1 mRNA downstream 2174 20316318 ~ 20320290 (+) True atp6v0ca
XM_043235622.1 mRNA downstream 7801 20321945 ~ 20327552 (+) True spsb3a
XM_043225682.1 mRNA downstream 14012 20328156 ~ 20331230 (+) True mrps34
XM_043229013.1 mRNA downstream 17190 20331334 ~ 20334050 (+) False nme3
XM_043229006.1 mRNA downstream 17799 20331943 ~ 20334050 (+) True nme3
TU32181 other upstream 125212 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 126097 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 205459 20106846 ~ 20107836 (+) False LOC122341546
TU32077 other upstream 245294 20064490 ~ 20068001 (+) False LOC122341338
unassigned_transcript_291 other downstream 116 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 981558 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1323599 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1661108 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1662365 21976509 ~ 22025911 (+) False wnk4b

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051164 True 656 mRNA 0.46 2 NC_007114.7 16064878 ~ 16068236 (-)