RNA id: XM_043235196.1


Basic Information

Item Value
RNA id XM_043235196.1
length 4278
RNA type mRNA
GC content 0.47
exon number 15
gene id cacnb1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20254824 ~ 20284900 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTGTATTTGCAAAAGGAGAGGGTTTGAGCTCAACGACACCAGAGCTGGGGGCGCAGCAGCCATCCGTGAGCCACGGGAAGCAGGAAAACCACCTtcgtcttttttattttacctttaattATTATACGatgcaaataaaactgaaagcaGGCTCTAAATGAAACAGTGAAACcgattttaaagtttaaatcaaTGGTACAGGAGGGTATTATGTCCAGGACGCCTTCCACCTCAACCCAGGAAATCCAAATGGACATGTTTGACCACCACGGCTCGCACGCACAGGGGAAGTATGCAAAGAGGAAGAGCCGTTTCAAACGTTCAGATGGCAGCACGTCCTCAGACACAACGTCTAACAGCTTCGTCCGACAGGGCTCAGCAGACTCCTACACCAGTCGTCCTTCAGACTCTGACGTGTCTCTGGAGGAGGACCCTGAGGCTCTCAGGAAAGAAGCCGATAGACAAGCTCTTGCCACCCTAGAGAAGGCTAAGACCAAGCCTGTAGCGTTTGCGGTGAGGACTAACGTTGGCTATAACCCAGGCCCTAATGACGATGTGCCGGTTCAGGGCATGGCTATCTCTTTCGAACCCAAAGACTTCCTGCACATCAAAGAGAAGTATAATAATGACTGGTGGATTGGGCGTTTGGTGAAGGAAGGGTGTGAGGTGGGGTTTATCCCCAGTCCGGTGAAGCTTGAGAGCACCCGTCAATTACAAGAACAGAGAATGAGACAGAACCGCCTTAGCTCCAGTAAGTCCGGAGGAAGCTCTAGTCTGGATGTTGCCACTGGTGCCCGGAGGCCCACTCCACCTGGAACAGCTGACTTGTCCTCTGGGCTTTATGACGATTCGGATTCTGAAGTTGAGGAGGTGGAGCCTTCCAACACCCGCGACCAAAAGGGTGTGGGCGGAAGTGTCACCTCCCCTCAAGGCAACCTGCCCCGCCTCCCTTTCTTTAAGAAGATGGAGCATGTTCCTCCTTATGATGTGGTGCCTTCCATGAGACCCATTATTTTGGTGGGACCATCCCTTAAAGGCTACGAGGTGACAGATATGATGCAGAAAGCTCTCTTTGATTTTCTAAAACACAAATTCGAAGGCAGAATATCCATCACCAGGGTGACAGCAGACATCTCACTTGCCAAACGTTCCGTGCTAAACAACCCCAGCAAACACACGATCATCGAGCGCTCCAGCACCAGATCCAGTCTGGACGTACTGGCTGAGGTACAGAGTGAAATCGAGAGAATCTTTGAGCTGGCCCGGACACTTCAGTTAGTGGCTCTGGATGCCGACACAATCAACCATCCGTCTCAACTGGCCAAGACGTCACTGGCACCTATCATAGTCTACATCAAGATTGCCTCTCCAAAGGTGTTGCAGAGGCTGATAAAGTCCAGGGGTAAATCTCAGGCCAAACATCTCAACGTCCAAATGGTGGCAGCTGATAAACTTGCACAGTGTCCTCCGgagCTTTTTGACATAATACTAGATGAGAATCAGCTGGAGGATGCGTGTGAACACCTGGCTGAGTACCTGGAGGCCTACTGGAAGGCTACACACCCTCCGAGCAGCAATCCCCCCAACCCTCTGCTCAATCGCACCATGGCCACGGCCGCCCTGGCAGCTTCACCCGAACCCGTCTCCAACCTGCAGGGACCGTTCCTGGTGCATGGAGAACAGAAGAGGGAAGGGCCTGAACGGGGCAGTCTCCAAGACTACCAGAGCGACCTGGGTGGCAAGCAGCCGCTGCGCTCTTCACGCAGCCAGCTGCAAACCAGCGGCCGAGGTCTGTCACGGCAGGATACGTTCGATTCCGAGACCCAGGGCAGCCGCGACTCGGCCTACACCGACGACATGGAGACCGACCCGTACGAGGAGCCGGACCCGTGCCGCTCCTACCGTCTCAACCCCGCCCACCACGCTCCTCGCCAGGCCTCCTGGGAGGATGAAGGGGCGGAGCCTGACCAGGAGAACCTCAACATGGTCCCAccaccagccaatcagcaccAGCGTGGACGAGGCAAGCTGAGGGAACGCTACTCTCAAGACGCAGGGGACGGCGGAGCCACGACGGGCCGCAACCATAACCAGGAGGAGTGGAGCAGAGATGTGTACATTCGCTAGAGCAGGTTTACCTGAGACGAGGGTGACGAGTTGTTTAGAGCGACACTATATAGAATCTCTATAGTTGGATCTGTTTACAACCCAGAGAAACACACAATCATTGACTAACGCTGTACAGCTGACACTCACGACATTCGCATTACGCTAACAAAGCTCTCGGTCATTACATATTTTAGGGTCAGCACGTGTCCTCTTTTTCTCAGAAGTCTTTCTTCTTagccaggattttttttttaagttctatTTATGGGATGTTTATGCCTTTATTGTGAGAGAATCGTAGAGAGATGACAGGAAAATATTGGCTGGAGAGAGAGCCGGGAATTGAACTCGGGGTCGTTTAGTTTGGCCAggatttctaaataaattaaaatgtatttttttaaataaaggcttGAATACACTAGTTTGTAAATAGTTGCAGAGGGAAAAACTAGGCATCGTATATTGGATGACTAAGGATAAAACACTACCAGACTTTGAGTCTTTCCGATCGCAACAACCAAGATACCCACACATTGTTGGTGGCAGCtgcatgacaaatgaaaacattgttgctgtttttttcttttgttgaattaagtcaaaatgtgaaatgtttaatatactCTGACTGAATGCAAATGGAGGTCTAAAGCCAAAATATAATATCCTTGCCAGGACAACTCTGGAAAAATAAAGACACGTGTTCACcctaatttagtttaaatcacattttttggaATAAGCAGGAGTACCTttcttcatttctattttacttttgtatagTACTGCATGACTCCTAATCATTAGAAGGTTAGTAACTGTTCTCGCTGAGCATTAAACACTATTCAGAATGTATAACCAAAATCTTTCaagcgtatgtgtgtgtgttcctaaAGGTTCGGTGGTcgggtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgcgtccTCTGTAGTCTTAAACAGGGTTTTTCTGATACACAGTAGTCTTTTTGGGACTTTCTTTCCACCAATCTGTTTCCCCAGACTACACTACTGCAGAGTGTCTCTttgtttctatttctatttgattctatttcttttatttattgagtCTCGAAAGGTCTATCCAGTTTTGAGCCTGCTAAAACCTTTACCGAGCTCCACCGCTGCTGCGTACTCCTCCAATCCTCAAGGGGTGCTGTGGTGCTCACATGCTATAGTTTCATAGGGCTAAAAAGCGCTAACGTGCATCAACAGATGTTCATCCAAATCTGCTAGCATCTCTAAAAGgctaatatgcaaatataaaacaattaagagGGTCAAATTTTAGAACTAAATGCCCAAAATGTTCGAGACCACCGCTAATGTCGAACACAAATAGCTTTGTGTTGATTGTAACCGGCTCTGTCCCGTCTTCTGTGCCTGCTCAAGGGCTTTTAGCATTTGTGCCGCTAGTGTACCACTGCCATTGGAAACATGTTCTGCCTTATTTGCACGTCAGTCACACAAGCCAACCAATCACAAGTGCCGTAATCTCTCATCAGGCCACTCCCACCATGAACACGGTGGGCTGTCTAAACTCAGTGCAACACAtagagttgttgttgttgttgttgtgtgataGTAGACTACACTGCCATTTTACCTTGTTATCATAGCGACATGTTTGCACTGCTAGCTATTCGAAGATTAAACAAGGTGTTTATTGCATGACCGTTTAAGGATTCACTTCAGAAGCTGAAAAGATGAACACAAACTCAACACTGACGTACATGCACACATCCTACTGCCAAACTCACGCTAATGCTACTGCTATTTGTGTTGTTATCTCTGTGGCCAATTTCTAAGCCAggactgtgtgtgcgtgtgtgtgtgtgtgtatgaaatgGGAGAAAATCTGGAGTCTTTACTATTTTATGTAACCAGAGCCTTGGTGAATGTCTTTGAGCCTCTTTTTACCCTCACCTATGTTTGAAAAAGATCATCATGATGGAATTCGCTAAATATACAAGTAGATAGCTTACTAAATAATGTTATTGTTGCATTATCGCaattgtttcaaaatataaGGAAAACAGACGTATTCTTTGGTGCCTGATTGTAGCtccattttactttttgtttttaatctgtggataaattaatattttaattaaaaattttaatctgGA

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0070978 voltage-gated calcium channel complex assembly biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04862 CACNB1; voltage-dependent calcium channel beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250526.1 lncRNA upstream 69298 20173694 ~ 20185526 (+) True LOC122342124
TU32179 lncRNA upstream 81822 20168636 ~ 20173002 (+) True G21652
XR_006250469.1 lncRNA upstream 93613 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA upstream 93619 20160436 ~ 20161205 (+) False LOC122341550
TU32079 lncRNA upstream 188948 20064960 ~ 20065876 (+) False LOC122341338
TU32184 lncRNA downstream 28395 20313295 ~ 20314144 (+) True G21655
TU32192 lncRNA downstream 54991 20339891 ~ 20345356 (+) True G21660
TU32193 lncRNA downstream 56172 20341072 ~ 20342296 (+) True G21661
TU32202 lncRNA downstream 108661 20393561 ~ 20393901 (+) True G21669
TU32204 lncRNA downstream 122892 20407792 ~ 20408327 (+) True G21671
XM_043235298.1 mRNA upstream 3335 20248076 ~ 20251489 (+) True bckdhbl
XM_043235299.1 mRNA upstream 3335 20248079 ~ 20251489 (+) False bckdhbl
XM_043225743.1 mRNA upstream 25154 20202133 ~ 20229670 (+) False gjc1
XM_043235940.1 mRNA downstream 2263 20287163 ~ 20290477 (+) True arl5c
XM_043235103.1 mRNA downstream 11572 20296472 ~ 20309460 (+) True lasp1
XM_043235443.1 mRNA downstream 31418 20316318 ~ 20320290 (+) True atp6v0ca
XM_043235622.1 mRNA downstream 37045 20321945 ~ 20327552 (+) True spsb3a
XM_043225682.1 mRNA downstream 43256 20328156 ~ 20331230 (+) True mrps34
TU32181 other upstream 66741 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 67626 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 146988 20106846 ~ 20107836 (+) False LOC122341546
TU32077 other upstream 186823 20064490 ~ 20068001 (+) False LOC122341338
unassigned_transcript_291 other downstream 29360 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 1010802 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1352843 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1690352 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1691609 21976509 ~ 22025911 (+) False wnk4b