RNA id: TU45360


Basic Information

Item Value
RNA id TU45360
length 799
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id LOC122343191
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23187316 ~ 23193862 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTCTGTTTCTGCGTTCGCCTGCACGAGGAGCTGGCATgcggtgggggcatctctcgtcccgatgccccctgagatcgacgcGGGAGGAAATTTTGACagagtcgccgaataggccagaaggctgcaggggggcgtccaataggcagaccctgtctctctctttcatatcggacagggtcagccaaaGATGCCTCTCCACGGCCACAAGGGATGCCATAGACCGCCCATAGAGCGCGGGCGGTCTCCTTCATGACGCAGAGGCAGAGGTCAGCGGTCGGCGCAGTTCTGCGATTTCGCCGGAGCTGATCCCCTCTCCCTCGTcgacctctttcagcaggtcggcttgatATGCCTGCAGAACtgccatagtgtgcatgcaagatCCAGCCAGACCCGCTGCTGTGTACCCCTTAGCcaccaaagccgacgttgttctaaGCGGCtttgatggtaaggtcggagccttcaaagacaATGCTgcaccgggggacagataggtggTGAGAGACTGTTCCAaccggggcatcgccttatagccgtactccgcgactcccgccaTATTTCCATAATAACAAACAGCAGTGGGTgagaaaacacgagcggagtacggccttccccaggacctccagatcacgcccctccaggtgccgctagcatcaccaacgtgagcgttgaagtcctccaacaggacgatagagtccccagttggagcactttccagcactcttcccaaggactccaagaatgccagacCTGAAAGAGCAGAGTCGAGAACTGAATGAAATGAAGGATCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250713.1 lncRNA upstream 4005 23187316 ~ 23188795 (+) False LOC122343191
TU45339 lncRNA upstream 49721 23066254 ~ 23143079 (+) True G30628
TU45356 lncRNA upstream 61095 23131314 ~ 23131705 (+) True G30637
TU45335 lncRNA upstream 66277 23006974 ~ 23126523 (+) True G30624
TU45312 lncRNA upstream 323097 22853481 ~ 22869703 (+) True G30607
TU45375 lncRNA downstream 69735 23263597 ~ 23264466 (+) True G30652
TU45376 lncRNA downstream 70671 23264533 ~ 23264741 (+) True G30653
TU45377 lncRNA downstream 72004 23265866 ~ 23266302 (+) True G30654
TU45381 lncRNA downstream 80643 23274505 ~ 23282812 (+) True G30658
TU45401 lncRNA downstream 206194 23400056 ~ 23539037 (+) True G30674
XM_043237277.1 mRNA upstream 9254 23168155 ~ 23183546 (+) True LOC122343008
XM_043236112.1 mRNA upstream 24793 23163695 ~ 23168007 (+) True LOC122342321
XM_043236110.1 mRNA upstream 412661 22777983 ~ 22780139 (+) True LOC122342317
XM_043237261.1 mRNA upstream 444180 22739960 ~ 22748620 (+) True LOC122342997
XM_043237259.1 mRNA upstream 486306 22695898 ~ 22706494 (+) False LOC122342996
XM_043237488.1 mRNA downstream 32349 23226211 ~ 23229732 (+) True LOC122343131
XM_043237507.1 mRNA downstream 158065 23351927 ~ 23375871 (+) True LOC122343152
XM_043236120.1 mRNA downstream 419616 23613478 ~ 23614930 (+) True LOC122342330
XM_043237168.1 mRNA downstream 439936 23633798 ~ 24144571 (+) True LOC122342945
XM_043237352.1 mRNA downstream 891097 24084959 ~ 24091352 (+) True LOC122343046
TU45341 other upstream 25543 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other upstream 25543 23163769 ~ 23167257 (+) False LOC122342321
TU45351 other upstream 33044 23157559 ~ 23159756 (+) True G30632
TU45355 other upstream 62611 23129106 ~ 23130189 (+) True G30636
TU45293 other upstream 413203 22778042 ~ 22779597 (+) False LOC122342317
XR_006250665.1 other downstream 923427 24117289 ~ 24122820 (+) False LOC122342976
XR_006250666.1 other downstream 939188 24133050 ~ 24141411 (+) False LOC122342990
XR_006250669.1 other downstream 1260463 24454325 ~ 24466400 (+) False LOC122343028
XR_006250668.1 other downstream 1271592 24465454 ~ 24470867 (+) False LOC122343023
TU45649 other downstream 1442502 24636364 ~ 24638654 (+) False LOC122343159

Expression Profile