RNA id: XR_006250666.1


Basic Information

Item Value
RNA id XR_006250666.1
length 5286
RNA type transcript
GC content 0.39
exon number 5
gene id LOC122342990
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24133050 ~ 24141446 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGGCGTCTCTTTGTGAAGTGTATTTAGTTCAGTTGGTTATACTGGCCATCCATGCCAGTTAAAGAATCGTTTTGttgtaaagatgtttattaatgcATCTAATTGTTTTGGATAGATGGCttcatgttaatattattttgtattttgtaaattcCACATGGCAGataattttttgtgtttgagatttatttgtttattgtgttttattctttGTATTCTAGATATATGTCATGGTTATCTTTATATTTGTCTTAattgaaagtgaaagtaaatgtACAGTAGTGATGTGTgaccattttaaacaaacacaatcatTTATAAAACTGAATGTCTTTAAATATCTAATAGAATCATTTATAATCACTATAAAGGAGAATTTCTCTTCAGCTGTTTGATAGAAACATGTAGggattttatattatagttttcaccctgaaagcaaataaacaatGGGTGTTTCCTGCTGATTGTCAATCTTAAAAAGTCCAAAGATCATCATGATATGTGACTAACCCTGTGCGTTTGAGGGAAGATCTCGTCAGATGAATTATAAAGACTCTGATTTCTGTAGATGTTGTGATTGTTTGTCTCTGTTATCTAGACTCTGTAGAGATCACACTGATCAGATCCATCATGGACAAAACCCAAACATCTAAAGGAAATGAAGGTTTTCTTACAGGGTGCAGAGATGAGCAGAGTGGAGACCACCAGAACGATTCCCACCAACCAGTGAATAATGAACTACAGAGAGTCAAAGACCAGCACAAAACCAGCATGAAGAACAAGTATGAGAGATTATTAGAGGAAATCAACCTAGACGAGACTCAAACTGTCCTGAAAAAGATCTGCGTtatagagggagagagtgaagaAGTGATTGAAGAACATGAGGTTGTACAGATGTGGAAGACAGTCAGAACACAACACTCACAAGACACTCCAATCTACTGCAATGACAACTTTAAAGCCTCACCTGAACCAGGATGTGAGGAGAAAGACCAGATCAAGACTGTTCTCACTAAAGGCATCGCTGGAATCGGAAAAACcatctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaagatgtagatttcatgtttgtgcttccaTTTCGAGAGCTGAACTTAATCCGAGATCATCAGTACagtcttcacagacttctgcAGGACTTTCATCCTGAACTTCAAAATCTGGACTCAAAGATTTATGAGGAGTGTaaagttgtgtttatttttgatggtctggatgaaagcagaatcacactgatgttttcagatgatcAGAAAGTTTGTGATGTGACTGAGACTTCATCAGTGAGTGTGTTGATGTCAAACCTCATGAAAGGAGAGCTGTGTTCTTCTGCTCtgatctggatcacctccagaccagcagcagccaatcaaatTCCCTCCAAATACATCAACCGTGTGACAGAAATTCAGGGATTCACTGAgcctcagaaggaggaatatttcaggaagagaatcagtgaccagcatcaagccagcagaatcatctcacacatcagAAGAGTAAGAAGCctccacatcatgtgccacatccccatcttctgctggatctcatccaCTGTGCTTGAGAAGCTCCTGGAAGAAGATCTGAATGCAGAAATccctcaaactctgactgaaatgtacattcactttCTGCTGATTCAGATCAACACGAGGAACCAGAAGTATGAAGAAAGAGATCCAGAGAAGCTCCTGAAGTCCAACAGAGAAGTGATTGTGAAACTTGCTGAAGTGGCTTTCAAACAGTTGATGAAAGGCAATGCGATGTTCTATGAGGAGGACCTGATTGAGAGCGGCATAGAGGTCAGTAATGACtcagtgtattctgggatttgCACAGAGATCTTTAAGGAGGAATCTGTGATTTATAAGAAGAAGGTCTACAGCTTCATCCATCTGAGCTTTCAGGAGTTTCTTGCAGCTTTCTATGTGTTTTACTCTCATATGGCCAACAAAGAATTGCAGCAGTTTCTTAATCTCTCTTTATATAAGGTGTTAAAAACCGCAGTAGATAAAGCTCTTGAGAGTAAGAATGGACACCTGGATCTGTTCCTACGGTTCCTGCTGGGCATCTCACTGGagtccaatcagagactcttGCAGGAtctactgacacacacagagaacagctCAGAGACCATCAGGGAAATAACCCAGGACATTAAAGAGATGATCAAAGATGAATATAATTGTTATCGTCTCTCAGATGGTCGGTCCATTAATCTCTTCCTCTGTCTCGAGGAAGTAGAGACTCTATCCAAACAAATTCAGGACTTCCTAAAATTAGACAAACACTCAGATTATGAattctctccatctttctgctCAACAATCACCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGGATGTTCAGAAATACAGCCCATCAACTGAGGGGAGACAGAGACTCATACCAGCTGTGAGCAACTGCAGAAGAGCTCTATTTGCTGGATGTGGTCTCTCTGATCAACACTGGGAAAATGTTTGCTCAGCTTTACAGTCATCAAACTCCCATCTTAGAGAATTAGACCTGAGTACCAATGAACTGCATGATTCAGGAGTTAAGCTGCTCTCTGTTGGACTGAAGAGTACCCATTGTCAACTGAACATACTGAGAATGCCAATGTGTCCCCAGCCCTGTAACCTCACGAGGATCACCCGGAAACCCAGTAGAGCACTGTGATGGATCTTTCAGCCTAAAGCAGCCAATGGCCTGCAATGGCAGAGAAAGGAACAGTGAGACTGTGACACAAGTGGACACCTGATATCTATAACTTCAACCACCAGGAGCTGACTAACATTATTTTCTCCTTGGCCCATACCCCTCAAGGGCCTCAGACAGGAGGTAAATAAACTGAACCTGCAAGTCACAGAGTTTTGCAGGGAAGTGATACCCGCTTGACGAGAGAGGTAATCAGTCTTCAGGAGCTGGAAGAAGTCATCAGACAGGACTTGGAAAGAGAACTGTTTCACACAAAgttactgttaaaaatgttgtatGTTGAATATTGTATAAGAGAGACACTAAAGCTAAGGCATTTGAAGGCCATCTGCATGCTGATCATGTTGCATGATCTGCAACATAAAGAGGAGCATGACATGGTTCACAGAAAACTGAAACAGTACTAATGACTGCACATGGACTCAAGAAAAAAAGCCTGAGCATCACACAGTCTTCAGCATTGCCACAATACATGGCCCTTCTACAGAAATCAACTAGCCAGCGGAGGACAGAGCTGTCACCAAGGCAATAGATCCAGGTTCCAGACCAGTCACTTGCAGGAGCCCTGGTGCCAAACGGAGACAGCTGGACACACCTACTCCTGAGCTACGGGAGCTGCTGACAGAAGCAACAAAGACAACGTTGAATGGAGTAATCGGCCCACACGCCCAAAAGCGAAACCTCTACTAACACAACAAGCTCAAATCAGTGCTGCCACAAACATCAGACTTCTAGTGACATTACCAGATCAGTCTAAAACTCTCTTCAAACTACAAAATCTTGTCTAATCTAGCTGTTCCACACTGTGGCTCCCCTCACTGATGGGAGTCTAGGCTTACTCCACAAGGAGTATAGCAGACTCATGGGTCTGTTTGTCCCTGTATTGGACATCTGCAGTGCTGTGGGTTGGTCCACCCCCTCTACCTTCGTCCGTTTCTGTGCATTGGACATTGGTATGACCAGAGTCTAGTGGTTTTTGTTGAGACATAGACAAAGGGCAGTGACTTGGAACCCTAGTGGCTTAGGCATCTCTTTCCCATAGTGCTTTGGATGCAGTTCAAATTCCCCAAAAAATCCCATCTCCAGGTTATGAATATAACTATGGTTCCTTGAGGGAACGAGACACTGCGTCCTGTTGCCATACTTCTGGCAACCCTGCCAGCGCAGATCTTCATGATTTTGAACCTGGTGCCTTTATGCTTTCCTGGGCTCTGACTTTTCCCTCAAGAAAccatgtttatattaataacctggagatttttttttcatttagccccattttttttcattataatacTGGGATAGTTTTAAATTTACTTGCAGACTGGAGACTCGTCTTCcttcaaattaatttcaataactttaaaaataaaaaaagtttatttaataattttttttctctgttagCTGGCACCTAATGGAATTGAAGGAAACTCTGCAGGGACATGAGccaaacagaatttaaataacagacttaataataaaaacaaacaaaaaaatgtttcactgtGAGTCACACAGTATTGATTGTTTTGCTTACATTtaccaacaaaaatataaagacataGCAGAACTGTTTGTCTTCAAACAACACAGAGGTGAATGAACCACCTACTTAAATGAATCAGCTATTTTAACAAATCAAATGACTTGATTACTTaatcattaatacatttaccATCGCCTATTGGCAGATATGGTTTAATGAATTCATActctaaataatgaaataaataataaaaataattttatattttcacaataatgaaattaataatataaataaatgaaggtaTAGTTGACTGACTCAAAAATTACAGTGGTGTTATTGTTTGCTTACATGgtctaaaacatttattaatgaagctactttttaaatgtttgatattttacaCAACaacttcaaaatatgttttagcaGTAAATTCTCAGGATAATTTGATctgtgattaattaattaaacaacatcatgcaattgtgagattaaacattttaatggcttCCCAGCCCTAGTGAATACACCTTACGATTTTACAAGTAATATGAGTTCCAGATTATAAGagataacaatattaatatcacTGTGTTGTTTTCCACACAGGCTACAGTTCTGTAATCTTAATTCTCAGTCTTGTAAATCTTGTTTGTAATCAGTTTTGTGCTCAGAGAGCTGGACTTGAGTTACAATGAcctttctgatggactgaagagtccaaactggcAGCTGAAGATACTGATCTTAAGAGTTTCAAAAACTTGACTGTTTCTCCCAATAGATTAATTACTAAAAGTCACACTATTATGTTTGGTGTTATATATGAACTGTTTTTATCTATAAACTATTTTGTTTCCTTGTTCAGATTGTCCATGTGTAATCTCACTGGTCAGTGTTGTGAGAGTTTGTCCTCAGTTTTACAATCTTCAGACACAgtcctgaaagagctggaccTCAGTAACAATAACCTGCAGGATTttggagtgaagctgctttctgatggactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45497 lncRNA upstream 85689 23787750 ~ 24047361 (+) False G30743
TU45496 lncRNA upstream 85689 23820614 ~ 24047361 (+) True G30743
TU45503 lncRNA upstream 102309 23907305 ~ 24030741 (+) True G30748
TU45514 lncRNA upstream 123159 24003642 ~ 24009891 (+) True G30754
TU45513 lncRNA upstream 123266 24003642 ~ 24009784 (+) False G30754
TU45595 lncRNA downstream 168928 24310339 ~ 24314288 (+) True G30819
TU45594 lncRNA downstream 171783 24313194 ~ 24314288 (+) False G30819
XR_006250692.1 lncRNA downstream 276432 24417843 ~ 24419568 (+) True LOC122343172
TU45587 lncRNA downstream 314611 24456022 ~ 24486887 (+) True G30812
XR_006250675.1 lncRNA downstream 494941 24636352 ~ 24638266 (+) False LOC122343159
XM_043237216.1 mRNA upstream 1563 24117289 ~ 24131487 (+) True LOC122342976
XM_043237221.1 mRNA upstream 1563 24117289 ~ 24131487 (+) False LOC122342976
XM_043237217.1 mRNA upstream 1563 24117289 ~ 24131487 (+) False LOC122342976
XM_043237222.1 mRNA upstream 1563 24117289 ~ 24131487 (+) False LOC122342976
XM_043237218.1 mRNA upstream 1563 24117289 ~ 24131487 (+) False LOC122342976
XM_043237311.1 mRNA downstream 3321 24144732 ~ 24149459 (+) False LOC122343029
XM_043237310.1 mRNA downstream 3343 24144754 ~ 24149459 (+) True LOC122343029
XM_043237309.1 mRNA downstream 3734 24145145 ~ 24149459 (+) False LOC122343029
XM_043237312.1 mRNA downstream 3754 24145165 ~ 24149459 (+) False LOC122343029
XM_043237323.1 mRNA downstream 11345 24152756 ~ 24156499 (+) False LOC122343033
XR_006250665.1 other upstream 10230 24117289 ~ 24122820 (+) False LOC122342976
TU45341 other upstream 965793 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other upstream 965793 23163769 ~ 23167257 (+) False LOC122342321
TU45351 other upstream 973294 23157559 ~ 23159756 (+) True G30632
TU45355 other upstream 1002861 23129106 ~ 23130189 (+) True G30636
XR_006250669.1 other downstream 312914 24454325 ~ 24466400 (+) False LOC122343028
XR_006250668.1 other downstream 324043 24465454 ~ 24470867 (+) False LOC122343023
TU45649 other downstream 494953 24636364 ~ 24638654 (+) False LOC122343159
TU45653 other downstream 498718 24640129 ~ 24646571 (+) True LOC122343125
TU45681 other downstream 580013 24721424 ~ 24728447 (+) True G30882

Expression Profile