RNA id: TU45490


Basic Information

Item Value
RNA id TU45490
length 635
lncRNA type read_through
GC content 0.49
exon number 2
gene id G30743
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23787750 ~ 24211480 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGCTGCTAGATGTTCCTGAAGGCTCAGGTGAACAAAGCAGAAGACTTTCCCCTGAAACAAGCCCAgctcctctctgaagatctgagtgcacaGTCCTGAATAAACTGATGCTTCTGTCTCATCAATGCCACACTCTTTCAGGTCTTCATCATAGAAGATCAGGTTTCCTTTCACAAGCTGCTGGAAAGCCAGTTTCCCCAGTTTGAGGATCATGTCTTCATCTGTCACGTTCTTCTCATAGTCTttctcatgtttgatgttggtctgaaggatcaggaagtgtgtgtacatttgagtgagagTCTTGGGAATCTCTCCAGTCTCTGCTCGACTCAAGATCTTCTCAAGAACAGcggctgagatccagcagaagactgggatgtgacacatgatgaaGAGGCTCCTGGAGGACTTCAGGTGTGAGATGATCCTGTCGGCCAGACTCTGATCACTGATCCTCTTCCTGAAGTATTCCTCCTTCTGTGTCTCATTGAAGCCTCGTACCTCTGTCACTCGATGGACGCACTCAGAGGGGACgagatcagctgctgctggtctggaggtgatccagatgagagcagagggaagcagattCCCCACTGTTACGCCCCCTATTGGTGTGATGGTCTAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45475 lncRNA upstream 11465 23721061 ~ 23787562 (+) True G30732
TU45467 lncRNA upstream 28322 23744325 ~ 23770705 (+) True G30724
TU45425 lncRNA upstream 37532 23456275 ~ 23761495 (+) True G30688
TU45401 lncRNA upstream 259990 23400056 ~ 23539037 (+) True G30674
TU45595 lncRNA downstream 98859 24310339 ~ 24314288 (+) True G30819
TU45594 lncRNA downstream 101714 24313194 ~ 24314288 (+) False G30819
XR_006250692.1 lncRNA downstream 206363 24417843 ~ 24419568 (+) True LOC122343172
TU45587 lncRNA downstream 244542 24456022 ~ 24486887 (+) True G30812
XR_006250675.1 lncRNA downstream 424872 24636352 ~ 24638266 (+) False LOC122343159
XM_043236120.1 mRNA upstream 184097 23613478 ~ 23614930 (+) True LOC122342330
XM_043237507.1 mRNA upstream 423156 23351927 ~ 23375871 (+) True LOC122343152
XM_043237488.1 mRNA upstream 569295 23226211 ~ 23229732 (+) True LOC122343131
XM_043237277.1 mRNA upstream 615481 23168155 ~ 23183546 (+) True LOC122343008
XM_043236112.1 mRNA upstream 631020 23163695 ~ 23168007 (+) True LOC122342321
XM_043236121.1 mRNA downstream 10597 24222077 ~ 24225829 (+) True LOC122342331
XM_043236123.1 mRNA downstream 20886 24232366 ~ 24244625 (+) True LOC122342332
XM_043237410.1 mRNA downstream 33295 24244775 ~ 24251547 (+) True LOC122343090
XM_043237409.1 mRNA downstream 33295 24244775 ~ 24251547 (+) False LOC122343090
XM_043237414.1 mRNA downstream 33295 24244775 ~ 24248366 (+) False LOC122343090
TU45341 other upstream 631770 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other upstream 631770 23163769 ~ 23167257 (+) False LOC122342321
TU45351 other upstream 639271 23157559 ~ 23159756 (+) True G30632
TU45355 other upstream 668838 23129106 ~ 23130189 (+) True G30636
TU45293 other upstream 1019430 22778042 ~ 22779597 (+) False LOC122342317
XR_006250669.1 other downstream 242845 24454325 ~ 24466400 (+) False LOC122343028
XR_006250668.1 other downstream 253974 24465454 ~ 24470867 (+) False LOC122343023
TU45649 other downstream 424884 24636364 ~ 24638654 (+) False LOC122343159
TU45653 other downstream 428649 24640129 ~ 24646571 (+) True LOC122343125
TU45681 other downstream 509944 24721424 ~ 24728447 (+) True G30882

Expression Profile