RNA id: TU45475


Basic Information

Item Value
RNA id TU45475
length 599
lncRNA type intronic
GC content 0.33
exon number 2
gene id G30732
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23721061 ~ 23787562 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttactatttttacatagcaactatataaaataactaattaaaaccttaaatttACAGTGATAAACTTGAAAGTTGGTgggttttatatgtaatttcacgtaatttgtcagtttttaatagtttaaaaacatattatcaatggtaatatactgtaatttaattgactgtaaattcaattctgtatttttacagtttttgcttgtaattttgtgaaatggttattttctgtaatttaacgGAATATCTCTGGAAGCCCTGCTGCCAGtctttttaccgtttttttacagatttttttttacagtgtaccatTCGGGTGaagctataatttaaaaaatattctctggtcagaaatggacaaaaaaatgcataagggttaaacaataaaccccaaaaacctctcctgcataacatacttgagtttatttagtgagcagtttggatcctccagtttttcagagagcagcttcactcctgaatctccaggatgattgtagctcagatccagctctctcaggtgtgaggggtttgaagtcagagctgaagacacataaccacagccttcctctgtcaccatacagccagacaatctgaaa

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45401 lncRNA upstream 182024 23400056 ~ 23539037 (+) True G30674
TU45405 lncRNA upstream 301552 23416682 ~ 23419509 (+) False G30676
TU45406 lncRNA upstream 301552 23416682 ~ 23419509 (+) True G30676
TU45381 lncRNA upstream 438249 23274505 ~ 23282812 (+) True G30658
TU45377 lncRNA upstream 454759 23265866 ~ 23266302 (+) True G30654
TU45493 lncRNA downstream 188 23787750 ~ 23929531 (+) False G30743
TU45497 lncRNA downstream 188 23787750 ~ 24047361 (+) False G30743
TU45490 lncRNA downstream 11465 23799027 ~ 24211480 (+) False G30743
TU45501 lncRNA downstream 13994 23801556 ~ 23829584 (+) True G30746
TU45496 lncRNA downstream 33052 23820614 ~ 24047361 (+) True G30743
XM_043236120.1 mRNA upstream 106131 23613478 ~ 23614930 (+) True LOC122342330
XM_043237507.1 mRNA upstream 345190 23351927 ~ 23375871 (+) True LOC122343152
XM_043237488.1 mRNA upstream 491329 23226211 ~ 23229732 (+) True LOC122343131
XM_043237277.1 mRNA upstream 537515 23168155 ~ 23183546 (+) True LOC122343008
XM_043236112.1 mRNA upstream 553054 23163695 ~ 23168007 (+) True LOC122342321
XM_043237352.1 mRNA downstream 297397 24084959 ~ 24091352 (+) True LOC122343046
XM_043237159.1 mRNA downstream 306318 24093880 ~ 24112912 (+) True kdm5a
XM_043237160.1 mRNA downstream 306318 24093880 ~ 24112912 (+) False kdm5a
XM_043237216.1 mRNA downstream 329727 24117289 ~ 24131487 (+) True LOC122342976
XM_043237221.1 mRNA downstream 329727 24117289 ~ 24131487 (+) False LOC122342976
TU45341 other upstream 553804 23163769 ~ 23167257 (+) False LOC122342321
TU45342 other upstream 553804 23163769 ~ 23167257 (+) False LOC122342321
TU45351 other upstream 561305 23157559 ~ 23159756 (+) True G30632
TU45355 other upstream 590872 23129106 ~ 23130189 (+) True G30636
TU45293 other upstream 941464 22778042 ~ 22779597 (+) False LOC122342317
XR_006250665.1 other downstream 329727 24117289 ~ 24122820 (+) False LOC122342976
XR_006250666.1 other downstream 345488 24133050 ~ 24141411 (+) False LOC122342990
XR_006250669.1 other downstream 666763 24454325 ~ 24466400 (+) False LOC122343028
XR_006250668.1 other downstream 677892 24465454 ~ 24470867 (+) False LOC122343023
TU45649 other downstream 848802 24636364 ~ 24638654 (+) False LOC122343159

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00075683 True 907 lncRNA 0.42 2 NW_003337109.1 29639 ~ 42286 (+)