RNA id: TU46427


Basic Information

Item Value
RNA id TU46427
length 1543
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G31443
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27363588 ~ 27410595 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttttttttttttTTTAGTTAAACGTTTATTTTAGTAGGGGAGGTTGCTTTAAGGCATCATAAGCACAAGTAGACAATACAGTGGTTTGGTTTGTTAGTCTTTGCATGCATGCTGAAAAAGATTAAATtgtttaaacagttaaaatagGTGATTTGTTTACTGTATTAGTATAGATACTTTGTATAGAGTAGAAAAAGCATCTGACAAATAACATAGCAGCCATAGCCTACACAGCGTAACAGCAGGGCTACCTACTGACCTGACATACTAAATCTATCCAAACATCACTCTTTAGGTCTAACTAATACCTGCCCACCAATAAGAAGTGAACAGGCCTTTCTATTTATCCTCAAAGGGATGCATcccattttaaaagttttagtaatCATTCATCAAACCATTAAACATGAAGATcgtaaaaacaaatacaaaagtgACAAATGTGTGGTTAGTTCAGTTTGCATTACACACAATATCTATGAAGTACCATAACAGTGTTTATACATCATGTTAATaacaattcaatttaaattatgtCATTGGCGCTTATGAATACATGCTTATATATCTAATGCTgacaattaaacacatttgaaaaaaagaacattcattataattattgtgtaatcaaagaaaaatgtagTGTAACCAGTAGTAAATACTGATGATTATGAACAAAACTTATATGAGAACTCcctaaaatcctttttttttttaaattaagcacAATTCAGAAATCTTAACATGCCTTATTTCAggaacagaacaaaacagaagTTTAAATAATTGCAGACTTCTGCATAACACGTGAAAACATCTTGATTGTTCATTTGAATACACACTTAAACGCACATACGAGGATCATATTTGAAATGATCTACAGAACATAGTACCTTTTGAACTCCTACACAATTATGTCCAACTAATATAGCTATAATGTACTGCTGAGGTAAAGTGAAAATATATCCTATTCAACCcacacaaataaatttaaaaaaaagcaatagttCTTTACAAATTTTTCCCTTCACGCTACTTTGGCTTCCAAAAGCTTACCTCATGGAAAGCtcaaacataacaaaatgcTCTTAGTGCACTACCAGCATTGAAAAGTGGTCTataagaaaaagtaaaagtaacatttcaaaatgtcagaAGTTGTAGTGTCTGATGGCATTCAACAGATCCTTGGACTTCACTGTCTTCTTatgattgcattaaaaatataaagaacagCATTCTTCCCTggagttttagattaaaatgcaCTTTGGGTTTTGGCAGCATGGCAAGACGGACAGGAAGTGTAAGTTCGAGAGAGAAACATGGGAAAGGGGAAACCAAAGAGATGCAGGGTGGAAGACAAGAAAGATAAAAGGAGAAGAAATAAATCGTCAAAGATAGAGAAGAGGGTCGTTTAAATGATAAAGAAcctgataaaaaaaagtgagagtACGAGAAAACTAGATGAATGATGCATGCATACAGAAACGATAGATGATTTCTTCAACCAGTCTGGG

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0099528 G protein-coupled neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04742 Taste transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46414 lncRNA upstream 1879 27360843 ~ 27406082 (+) False LOC122342806
TU46415 lncRNA upstream 1879 27360843 ~ 27406082 (+) False LOC122342806
TU46404 lncRNA upstream 38779 27297536 ~ 27369182 (+) False LOC122342372
TU46401 lncRNA upstream 174529 27233096 ~ 27233432 (+) True G31438
TU46389 lncRNA upstream 209695 27197887 ~ 27198266 (+) True G31429
XR_006250747.1 lncRNA downstream 197192 27607787 ~ 27619661 (+) True LOC122343300
XR_006250749.1 lncRNA downstream 197192 27607787 ~ 27616858 (+) False LOC122343300
XR_006250748.1 lncRNA downstream 197192 27607787 ~ 27616858 (+) False LOC122343300
XR_006250746.1 lncRNA downstream 197192 27607787 ~ 27616858 (+) False LOC122343300
TU46445 lncRNA downstream 197192 27607787 ~ 27616827 (+) False LOC122343300
XM_043236921.1 mRNA upstream 1873 27390339 ~ 27406088 (+) True LOC122342806
XM_043236927.1 mRNA upstream 1873 27390339 ~ 27406088 (+) False LOC122342806
XM_043236924.1 mRNA upstream 1873 27390339 ~ 27406088 (+) False LOC122342806
XM_043236923.1 mRNA upstream 1873 27390339 ~ 27406088 (+) False LOC122342806
XM_043236925.1 mRNA upstream 1873 27390339 ~ 27406088 (+) False LOC122342806
XM_043237110.1 mRNA downstream 8948 27419543 ~ 27436028 (+) True LOC122342913
XM_043237111.1 mRNA downstream 25838 27436433 ~ 27442200 (+) True tcf19l
XM_043237687.1 mRNA downstream 49886 27460481 ~ 27543243 (+) False pvrl2l
XM_043237688.1 mRNA downstream 49920 27460515 ~ 27599258 (+) True pvrl2l
XM_043237686.1 mRNA downstream 212077 27622672 ~ 27649545 (+) True atp1a3a
TU46402 other upstream 39971 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other upstream 39971 27366351 ~ 27367990 (+) False LOC122342372
TU46406 other upstream 49814 27357443 ~ 27358147 (+) False LOC122342494
unassigned_transcript_953 other upstream 183975 27223914 ~ 27223986 (+) True trnav-uac_5
unassigned_transcript_952 other upstream 266337 27141552 ~ 27141624 (+) True trnav-aac_9
TU46683 other downstream 796363 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 808138 28218733 ~ 28221417 (+) True G31619
TU46717 other downstream 874432 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 874432 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 889432 28300027 ~ 28301346 (+) False LOC122342379

Expression Profile