RNA id: TU46688


Basic Information

Item Value
RNA id TU46688
length 642
RNA type TUCP
GC content 0.57
exon number 4
gene id G31619
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28218733 ~ 28221417 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggatggATTTTGAGGATTTCTGCAAGTACTTCACAGACCTGATCCTGTGCCGCTTGATTAACACGTCGCACCTGAGCATCCACAAGACCTGGGAGGAGGAAGTGATGCGGGCTCCTGGTGTCGCCATGACGACCCTTTAAGGAACCGAGCAGGAGGCTGCATCAACCACAAAGCCACGTTCCTGCAGAAcccacagTATGTGTTTGACGTGACGAAGCCAGAGGACGAGGTTTTGATCTGCATTCAGCAGCAGGACAAGAGAGCGAGATCTAAAGACGGCAAAGGAGAGAACGTGGCCATCGGCTTTGACATCCAGAAAGTGGAGCTGAACCGGACGCACCGCATGCACACCATCCAGAAAACTGTGGGCAGCTCCATCTACATTAACTCCCGCAGCGTGTTCCTGCGCAAGGACCTGAAGGAGGGCCGCTACGTCATCGTTCCCACGACCTTTGACCCCGGCCTGCAGGCAGACTTCCTGTTGCGCGTCTTCACAGATGTACCTGCTGCCTGCAAGGAGCTGGTGACGGACGAGCCTCCTCACACCTGCTGGACCGGATGCTGTGGTTACCCCAAGCTGGTCACTCAGGTGCACGTCCACAGGGCCGACggactccaggctcaggactCTGATGGATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46663 lncRNA upstream 56468 28144440 ~ 28162265 (+) True G31603
TU46642 lncRNA upstream 97574 28120252 ~ 28121159 (+) True G31596
TU46573 lncRNA upstream 150943 27960947 ~ 28067790 (+) False G31548
TU46690 lncRNA downstream 4983 28226400 ~ 28228301 (+) False G31621
TU46692 lncRNA downstream 4983 28226400 ~ 28228301 (+) False G31621
TU46693 lncRNA downstream 4983 28226400 ~ 28228301 (+) True G31621
TU46694 lncRNA downstream 4983 28226400 ~ 28228301 (+) False G31621
TU46695 lncRNA downstream 4983 28226400 ~ 28228301 (+) False G31621
XM_043236151.1 mRNA upstream 17722 28197236 ~ 28201011 (+) True LOC122342376
XM_043236236.1 mRNA upstream 108686 28106617 ~ 28110047 (+) True LOC122342444
XM_043236671.1 mRNA upstream 135763 28080859 ~ 28082970 (+) True krt91
XM_043237699.1 mRNA upstream 254509 27953450 ~ 27964224 (+) False si:ch211-264f5.2
XM_043236153.1 mRNA downstream 75885 28297302 ~ 28317582 (+) True LOC122342379
XM_043237531.1 mRNA downstream 133013 28354430 ~ 28360242 (+) True dhdh.1
XM_043236221.1 mRNA downstream 139529 28360946 ~ 28367478 (+) False dhdh.2
XM_043236222.1 mRNA downstream 139529 28360946 ~ 28367455 (+) True dhdh.2
XM_043237898.1 mRNA downstream 166090 28387507 ~ 28410310 (+) True LOC122343436
TU46683 other upstream 2485 28206958 ~ 28216248 (+) True G31614
TU46402 other upstream 850743 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other upstream 850743 27366351 ~ 27367990 (+) False LOC122342372
TU46406 other upstream 860586 27357443 ~ 27358147 (+) False LOC122342494
unassigned_transcript_953 other upstream 994747 27223914 ~ 27223986 (+) True trnav-uac_5
TU46717 other downstream 63610 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 63610 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 78610 28300027 ~ 28301346 (+) False LOC122342379
TU46708 other downstream 80990 28302407 ~ 28302897 (+) False LOC122342379
TU46732 other downstream 128936 28350353 ~ 28353226 (+) True G31649

Expression Profile