RNA id: XM_043237791.1


Basic Information

Item Value
RNA id XM_043237791.1
length 2294
RNA type mRNA
GC content 0.48
exon number 7
gene id ogfr
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25703831 ~ 25709637 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAGGGAGTGAGGGAGGGAGTGACTGTGGGGAGCgcagtgagtgagtgagtgagtcagGCCGCCGAGCACTGCTCATCCAATGGAGCTGTGCGGATCCCCGTCCCACTCTAGCTTACCGATCACGTTTATCACCGTGCACATGATCTTCAGGGATGGACGACGATCTGGTGTGTGAATATGACTCCACCTGGGACACGGAGAGCGACGGGGACGAGCTGGAGAACACCGGCCGCAGCAAGAAAACACGGCCCGCTTTCTGGTCCAACTCCTCCTCAAGAAACCTCAGAGCGGCTAAGGACATGCAGAACTACAGACACGGATATCCAAACATTAATGAAGAGGAATGTCCAGAAGAGAGAATGACTAATTTAAAATTCTatctgaatgaaattaaatcatcTCCTGATGATGTGTCGATTGAGACATTTCACACCGAGTGGAGAACCGATTACAAAAGACTGGAGAGAGTTCACTCCTACATTCAGTGGTTGTTTCCTTTGCGAGAGCCCGGAGTTAACTACATGGCTGCGGAGCTCACCAAGAAGGAAATCCAAGCCTTCAAGGAGAGCGATGAAGCTAAGAGCCGTCTCCTGGACTCCTACGAGCTCATGCTCGGCTTCTACGGCATACAGCTGCTCAACAGAGAAACCGGGGAGGTGAAGCGCGCTGAGAACTGGAGAGAGAGATTCGCCAATCTAGAGAGAAACATGCACAACAATCTCCGAATCACAAGGATACTCAAGAGCCTGGGAGAGCTGGGTTTTGAGCATTTCCAAGCCCCTCTGGTGCGATTCTTCCTGGAGGAGACCCTGGTTAGAAAGACCCTCAGCAGCGTCAAACGCAGCGTACTCGACTACTTCCTGTTCGCTGTGCGGGACAAGCGTGAGCGCAGGAAGCTGGTGCGCTTCGCCTTCCAGCACTTTGAGCCCAAAGACAAGTTTGTGTGGTGCCCCAGGAAAATCCAAAAACGCTTCAAGAAGAAGTCGGAGAAGCGGCAGAACTCTTCAGCTGGTAGCGGCGGAGAGAGCGCAGCACAGGACGAAGGTCATTCACGATACAAAAACAAGGATGCAGAAGCCGCCAGCGAGCCAAAACACAGCAAGCCGGTCGCTGAGCTCACAGACGCAAAGAAGCAAGTCGACAGCGACTCCGTAATGAGAGCGGAAGATCAGGAGCCCAATCCAGACGCTGCTTCTGTACAATTGGCTCTTACTAACGGCACCGCTGTTAACAACGGAGAGACTGTTAGCGACGAGCCACGCTGTGCTGAAGACCAGCAAGTCTCCCAGAAGCCTGAGCGAGCGGCGGAGGCTCCGGATGCTAGCTGCGAGCGTGTAGCCGCTCTTAACACAGGATCGGCAGACTGTGACGACTCTCGGGACGAGACGGACCGTCTGCTCTGTCCTGCTGACTCTCAGGAGGAGCCGGAGGGAACGAGTGAGGATAGGACAGTGACTGACAGCCCTAAACACAACACACCAACACAGTCTGAGAAGCTTCCCAGGCCTGGCCTGACCCTGACCAGCATCCAGCCAGAGAACCATGAGAAGAACGCAACGAACTGCAACCAGGCTAACGGATCAGAGACCGAAGAGCCAATGGACATTGTGGACACAAGTTCATACCTCGCCCACGAATGACTCCCGAACACCACGAAGCACTGAAAATTGACACTTTATGAACTTCTTATGAACTGATATGAGATATGAACTGAGCTGTTTTTTAAAGAGGGTTCGTTCTAACAGGTTTTCTGTGCGGTGGGGCCAAATGTTCTTGttatagctgtttttttttctagtttgaatgtttatttgtcCATACTTTTTCTTAAACTGAAACTGTGAAAGAGGAATGTACATTCATCTATTGATGAGAATATGTCCATAGTAAAACCATAGAGTTAGGGTCTTGTTTTTCAGCAGATACACTGTATTTTTGCTGATGAAATTctctttcatgtttttaatgctaTTCCTGAATTCAACTGAAAGAGCTTGTCTTTTACTAAGCTAATTTCTTagtttctaaaatgttaatttacgGTCATAAACTAAAGAAGCGTTAATAAGCCCTATGATCAGacgttttaaaatcaattcctTGAATGTGCAGCAATGCAGTAACTCCAGATTAAAACTCTTCCCACGGTACCATGAATAAACCcttcatgtttcatttaatgtttatatattgttttctgttgttttaaaataactaattaaattgTACATTCTTTTTGCTCAATTGCTTAAGCTCAGTAATAATAAAGGCAGAAGAATTTAAGGGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46232 lncRNA upstream 17846 25680141 ~ 25685985 (+) True LOC122342771
TU46139 lncRNA upstream 388278 25315179 ~ 25315553 (+) True G31228
TU46137 lncRNA upstream 389235 25314223 ~ 25314596 (+) True G31226
TU46134 lncRNA upstream 714557 24988867 ~ 24989274 (+) True G31223
TU45676 lncRNA upstream 988833 24714697 ~ 24714998 (+) True G30877
TU46335 lncRNA downstream 77743 25787380 ~ 25787901 (+) True G31380
TU46346 lncRNA downstream 107394 25817031 ~ 25817455 (+) False G31388
TU46343 lncRNA downstream 107434 25817071 ~ 25817564 (+) True G31388
TU46344 lncRNA downstream 107434 25817071 ~ 25817455 (+) False G31388
XR_006250606.1 lncRNA downstream 206752 25916389 ~ 25917199 (+) True LOC122342592
XM_043236866.1 mRNA upstream 17959 25635042 ~ 25685872 (+) False LOC122342771
XM_043236868.1 mRNA upstream 17959 25635044 ~ 25685872 (+) False LOC122342771
XM_043236863.1 mRNA upstream 17959 25635045 ~ 25685872 (+) False LOC122342771
XM_043236870.1 mRNA upstream 17959 25635045 ~ 25685872 (+) False LOC122342771
XM_043236867.1 mRNA upstream 17959 25635047 ~ 25685872 (+) False LOC122342771
XM_043236264.1 mRNA downstream 2025 25711662 ~ 25728651 (+) True col9a3
XM_043236137.1 mRNA downstream 265240 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 463557 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 673279 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 1055316 26764953 ~ 26767173 (+) True LOC122342366
TU46238 other upstream 8450 25693802 ~ 25695381 (+) True G31298
XR_006250647.1 other upstream 15601 25635045 ~ 25688230 (+) False LOC122342771
XR_006250648.1 other upstream 19211 25635042 ~ 25684620 (+) False LOC122342771
XR_006250558.1 other upstream 936279 24743848 ~ 24767552 (+) False LOC122342408
TU45681 other upstream 975384 24721424 ~ 24728447 (+) True G30882
TU46339 other downstream 102994 25812631 ~ 25813625 (+) True G31384
unassigned_transcript_386 other downstream 115474 25825111 ~ 25825192 (+) True trnas-uga
unassigned_transcript_387 other downstream 116987 25826624 ~ 25826696 (+) True trnak-uuu_1
unassigned_transcript_388 other downstream 117524 25827161 ~ 25827242 (+) True trnas-uga_1
unassigned_transcript_389 other downstream 117715 25827352 ~ 25827424 (+) True trnak-uuu_2

Expression Profile