RNA id: unassigned_transcript_389


Basic Information

Item Value
RNA id unassigned_transcript_389
length 73
RNA type tRNA
GC content 0.58
exon number 1
gene id trnak-uuu_2
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25827352 ~ 25827424 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcccgggtagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46343 lncRNA upstream 9788 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 9897 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 9897 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 39451 25787380 ~ 25787901 (+) True G31380
TU46232 lncRNA upstream 141367 25680141 ~ 25685985 (+) True LOC122342771
XR_006250606.1 lncRNA downstream 88965 25916389 ~ 25917199 (+) True LOC122342592
XR_006250570.1 lncRNA downstream 334067 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 608924 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 616082 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 651292 26478716 ~ 26478933 (+) True G31412
XM_043236264.1 mRNA upstream 98701 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 117715 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 117715 25703962 ~ 25709637 (+) False ogfr
XM_043236865.1 mRNA upstream 141480 25635051 ~ 25685872 (+) False LOC122342771
XM_043236137.1 mRNA downstream 147453 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 345770 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 555492 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 937529 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1177277 27004701 ~ 27006306 (+) True LOC122342369
unassigned_transcript_388 other upstream 110 25827161 ~ 25827242 (+) True trnas-uga_1
unassigned_transcript_387 other upstream 656 25826624 ~ 25826696 (+) True trnak-uuu_1
unassigned_transcript_386 other upstream 2160 25825111 ~ 25825192 (+) True trnas-uga
TU46339 other upstream 13727 25812631 ~ 25813625 (+) True G31384
TU46238 other upstream 131971 25693802 ~ 25695381 (+) True G31298
unassigned_transcript_390 other downstream 732 25828156 ~ 25828236 (+) True trnas-aga_2
unassigned_transcript_391 other downstream 1077 25828501 ~ 25828583 (+) True trnas-uga_2
unassigned_transcript_392 other downstream 3007 25830431 ~ 25830512 (+) True trnas-aga_3
unassigned_transcript_393 other downstream 3354 25830778 ~ 25830859 (+) True trnas-uga_3
unassigned_transcript_394 other downstream 4553 25831977 ~ 25832048 (+) True trnah-gug