RNA id: unassigned_transcript_400


Basic Information

Item Value
RNA id unassigned_transcript_400
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-uga_6
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25836824 ~ 25836905 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctccccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46343 lncRNA upstream 19260 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 19369 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 19369 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 48923 25787380 ~ 25787901 (+) True G31380
TU46232 lncRNA upstream 150839 25680141 ~ 25685985 (+) True LOC122342771
XR_006250606.1 lncRNA downstream 79484 25916389 ~ 25917199 (+) True LOC122342592
XR_006250570.1 lncRNA downstream 324586 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 599443 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 606601 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 641811 26478716 ~ 26478933 (+) True G31412
XM_043236264.1 mRNA upstream 108173 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 127187 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 127187 25703962 ~ 25709637 (+) False ogfr
XM_043236865.1 mRNA upstream 150952 25635051 ~ 25685872 (+) False LOC122342771
XM_043236137.1 mRNA downstream 137972 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 336289 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 546011 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 928048 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1167796 27004701 ~ 27006306 (+) True LOC122342369
unassigned_transcript_399 other upstream 267 25836476 ~ 25836557 (+) True trnas-aga_5
unassigned_transcript_398 other upstream 1264 25835479 ~ 25835560 (+) True trnas-uga_5
unassigned_transcript_397 other upstream 1805 25834947 ~ 25835019 (+) True trnak-uuu_3
unassigned_transcript_396 other upstream 3303 25833441 ~ 25833521 (+) True trnas-uga_4
unassigned_transcript_395 other upstream 3651 25833093 ~ 25833173 (+) True trnas-aga_4
unassigned_transcript_401 other downstream 1048 25837953 ~ 25838025 (+) True trnak-uuu_4
unassigned_transcript_402 other downstream 1856 25838761 ~ 25838842 (+) True trnas-aga_6
unassigned_transcript_403 other downstream 2203 25839108 ~ 25839189 (+) True trnas-uga_7
unassigned_transcript_404 other downstream 3400 25840305 ~ 25840376 (+) True trnah-gug_1
unassigned_transcript_405 other downstream 3713 25840618 ~ 25840690 (+) True trnak-uuu_5