RNA id: unassigned_transcript_447


Basic Information

Item Value
RNA id unassigned_transcript_447
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnak-uuu_20
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25892978 ~ 25893050 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46343 lncRNA upstream 75414 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 75523 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 75523 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 105077 25787380 ~ 25787901 (+) True G31380
TU46232 lncRNA upstream 206993 25680141 ~ 25685985 (+) True LOC122342771
XR_006250606.1 lncRNA downstream 23339 25916389 ~ 25917199 (+) True LOC122342592
XR_006250570.1 lncRNA downstream 268441 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 543298 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 550456 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 585666 26478716 ~ 26478933 (+) True G31412
XM_043236264.1 mRNA upstream 164327 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 183341 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 183341 25703962 ~ 25709637 (+) False ogfr
XM_043236865.1 mRNA upstream 207106 25635051 ~ 25685872 (+) False LOC122342771
XM_043236137.1 mRNA downstream 81827 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 280144 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 489866 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 871903 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1111651 27004701 ~ 27006306 (+) True LOC122342369
unassigned_transcript_446 other upstream 1422 25891475 ~ 25891556 (+) True trnas-uga_19
unassigned_transcript_445 other upstream 3806 25889091 ~ 25889172 (+) True trnas-aga_20
unassigned_transcript_444 other upstream 5018 25887888 ~ 25887960 (+) True trnak-uuu_19
unassigned_transcript_443 other upstream 6518 25886379 ~ 25886460 (+) True trnas-uga_18
unassigned_transcript_442 other upstream 6860 25886037 ~ 25886118 (+) True trnas-aga_19
unassigned_transcript_448 other downstream 1452 25894502 ~ 25894582 (+) True trnas-aga_21
unassigned_transcript_449 other downstream 3735 25896785 ~ 25896865 (+) True trnas-aga_22
unassigned_transcript_450 other downstream 4081 25897131 ~ 25897212 (+) True trnas-uga_20
unassigned_transcript_451 other downstream 5607 25898657 ~ 25898729 (+) True trnak-uuu_21
unassigned_transcript_452 other downstream 6409 25899459 ~ 25899540 (+) True trnas-aga_23