RNA id: TU55097


Basic Information

Item Value
RNA id TU55097
length 546
RNA type TUCP
GC content 0.55
exon number 3
gene id LOC122344991
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17364849 ~ 17372859 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGACACACTCTCGTATCTGTTCGGACTAAACGTGGCCTCATGATTCTCGCCGGAGCCTTTTACCCTTTTCTCTCATTGCTCTCCCACAGATTTGCCAGAGTGGATTGTTGATAGTTTATTATCTGGAAGACGGTGGTCGCAGGATGGACGCGGAGCTGGGTGCTGACAGCGCCCGCAGAAAGATGGAGGCAGCGGGCGAGGCGCTGGAGATCGTGCCGCTGGAAATGTATGATTCAGCCCGAGCCAAAATAGCGGCTAATCTTCGATGGCTGTTTGCCAAAGCCTTCGGTATCGATCACATCCCAGAGGACCTGCGAGACCCCTTCTACACAGACCAGTATGAGCAGGAGCACATTAAGCCCCCTGTGATCCGGTTGCTGCTGTCCTGTGAGCTGTACTGTCGCGTGTGTGGCCTCATTCTCAAAGGAGACCAGGTGGCCTCTCTGCAGTCCCACCTGTCAGTCATCCAGGCCTTGTCTCGCAAAGGCATCTATGTCATGGAGGGTGATGACACGCCTGTCACCGACTCAGATCTGACCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55087 lncRNA upstream 7110 17354606 ~ 17357759 (+) True G37331
TU55088 lncRNA upstream 9063 17354606 ~ 17355806 (+) False G37331
TU55096 lncRNA upstream 11773 17351156 ~ 17353096 (+) True G37333
TU55085 lncRNA upstream 13947 17350591 ~ 17350922 (+) True G37330
TU55036 lncRNA upstream 474892 16889197 ~ 16889977 (+) True G37308
TU55156 lncRNA downstream 156274 17526042 ~ 17527444 (+) True LOC122345691
XR_006251028.1 lncRNA downstream 224100 17593868 ~ 17614996 (+) True LOC122345748
TU55253 lncRNA downstream 522183 17891951 ~ 17893273 (+) True G37433
TU55269 lncRNA downstream 649562 18019330 ~ 18019601 (+) True G37449
TU55300 lncRNA downstream 668364 18038132 ~ 18044460 (+) True G37475
XM_043239182.1 mRNA upstream 36455 17319860 ~ 17328414 (+) True LOC122345236
XM_043239181.1 mRNA upstream 36455 17319860 ~ 17328414 (+) False LOC122345236
XM_043239178.1 mRNA upstream 36455 17321464 ~ 17328414 (+) False LOC122345236
XM_043239177.1 mRNA upstream 36455 17321466 ~ 17328414 (+) False LOC122345236
XM_043239180.1 mRNA upstream 36455 17321661 ~ 17328414 (+) False LOC122345236
XM_043240455.1 mRNA downstream 3505 17373273 ~ 17374248 (+) True LOC122345919
XM_043238292.1 mRNA downstream 5084 17374852 ~ 17377009 (+) True LOC122344741
XM_043240097.1 mRNA downstream 156256 17526024 ~ 17527353 (+) False LOC122345691
XM_043239052.1 mRNA downstream 184642 17554410 ~ 17586352 (+) True rasa1a
XM_043239047.1 mRNA downstream 222145 17591913 ~ 17593686 (+) True LOC122345176
TU54920 other upstream 803128 16486620 ~ 16561741 (+) True G37228
TU54916 other upstream 804137 16484002 ~ 16560732 (+) False G37227
TU54918 other upstream 804137 16484002 ~ 16560732 (+) True G37227
TU54012 other upstream 2644382 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 2712958 14647489 ~ 14651911 (+) False fgf5
XR_006250965.1 other downstream 1473051 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other downstream 1473051 18842819 ~ 18847665 (+) False arsk
TU55500 other downstream 1569045 18938813 ~ 18940895 (+) True G37626
TU55503 other downstream 1569045 18938813 ~ 18940895 (+) False G37626
XR_006251073.1 other downstream 1592554 18962322 ~ 18999279 (+) False msh3

Expression Profile