RNA id: XM_043240097.1


Basic Information

Item Value
RNA id XM_043240097.1
length 402
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC122345691
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17526024 ~ 17527444 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTACGTTACCCATAAGGCTGTTCGCCCTCTATCTCCAGACAGGAAGGTCGTTGAGAGTCAGACTCAGGTTGAGCAGATCTCACATTTTAGCAGTAAACGATGCTCGGACAAGCCGTGCGACGCTTCGCCACCTCTGCGGTTCGCTCTAGTCACTATGCGGAGGGACCAGGAAAGAACTTGCCGTTCTCTGTAGAGAACAAGTGGAGGCTTCTTGGCATGATGGTGCTGTTCTTTGGCAGTGGATTTGTTCCCTTCATTGTCGTCAGGCACCAGATCCTGAAGAAGTGAAGCTCCTACCAGTCACACATTgtcAGTGTGATTCTTGTACAACACAGCTCTCAGTTTCTTCTGGTGTGGATCCTGTGatgttattgtaaataaaatgaccaaTTTACCTTGC

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55087 lncRNA upstream 168265 17354606 ~ 17357759 (+) True G37331
TU55088 lncRNA upstream 170218 17354606 ~ 17355806 (+) False G37331
TU55096 lncRNA upstream 172928 17351156 ~ 17353096 (+) True G37333
TU55085 lncRNA upstream 175102 17350591 ~ 17350922 (+) True G37330
TU55036 lncRNA upstream 636047 16889197 ~ 16889977 (+) True G37308
XR_006251028.1 lncRNA downstream 66515 17593868 ~ 17614996 (+) True LOC122345748
TU55253 lncRNA downstream 364598 17891951 ~ 17893273 (+) True G37433
TU55269 lncRNA downstream 491977 18019330 ~ 18019601 (+) True G37449
TU55300 lncRNA downstream 510779 18038132 ~ 18044460 (+) True G37475
TU55299 lncRNA downstream 511295 18038648 ~ 18044946 (+) False G37475
XM_043238292.1 mRNA upstream 149015 17374852 ~ 17377009 (+) True LOC122344741
XM_043240455.1 mRNA upstream 151776 17373273 ~ 17374248 (+) True LOC122345919
XM_043238683.1 mRNA upstream 153165 17364849 ~ 17372859 (+) True LOC122344991
XM_043239180.1 mRNA upstream 197610 17321661 ~ 17328414 (+) False LOC122345236
XM_043239052.1 mRNA downstream 27057 17554410 ~ 17586352 (+) True rasa1a
XM_043239047.1 mRNA downstream 64560 17591913 ~ 17593686 (+) True LOC122345176
XM_043240159.1 mRNA downstream 368721 17896074 ~ 17899622 (+) True polr3g
XM_043240614.1 mRNA downstream 380055 17907408 ~ 18012794 (+) True adgrv1
XM_043240149.1 mRNA downstream 834520 18361873 ~ 18369522 (+) True nr2f1a
TU55097 other upstream 156256 17364869 ~ 17369768 (+) False LOC122344991
TU54920 other upstream 964283 16486620 ~ 16561741 (+) True G37228
TU54916 other upstream 965292 16484002 ~ 16560732 (+) False G37227
TU54918 other upstream 965292 16484002 ~ 16560732 (+) True G37227
TU54012 other upstream 2805537 14718532 ~ 14720487 (+) True G36640
XR_006250965.1 other downstream 1315466 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other downstream 1315466 18842819 ~ 18847665 (+) False arsk
TU55500 other downstream 1411460 18938813 ~ 18940895 (+) True G37626
TU55503 other downstream 1411460 18938813 ~ 18940895 (+) False G37626
XR_006251073.1 other downstream 1434969 18962322 ~ 18999279 (+) False msh3

Expression Profile