RNA id: XM_043240159.1


Basic Information

Item Value
RNA id XM_043240159.1
length 829
RNA type mRNA
GC content 0.41
exon number 8
gene id polr3g
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17896074 ~ 17899622 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGTTTATATTCGTCCAAAAGCTGTAACAGAGCAAGCCCTTCCATCGCCAGGAAGTTTAAGGAATATTTGACTGACCAAAATGGCAGGAAAGGGCAGAGGAGTAGCAGCATTCACCTTCAACATAGAGTCCCTGGGTCTCACCAGAGGGTCCATGCCAGAAACTCAGAGAGGGCCATCTCCACTCTTCCCACAAATTGAATATAAACCAGGGCCTCTAAAAGCTGGAGAGGATGAAGACTATATGAGAGCTTTGAAACAAGAGATGAGAGGACGAATGAAAGACCTCCCATTTAACATAAAACCCCATGCAGGAAAGGGAGATGTGGAGAGGTACAAGGAGAAATACGCAAGAGAAATTAAAAGAATTGAAAATGACAACTGGACACCAGATTGGAACAATCTTCCGAAGGAGCTAAAGCCACAAAAAAAGATTGTTCGGAAGAAAAGGGatgctAAGAAAATGTCGAAGATCTCAAGTAAGGACAAGGAGGCAGTGCTGAATAAACTTGATgagctagAAAAGAAGGGAGATGCAAAATCTGATGAGGAGGAAGAAGCGGGGGGAGCGAAGAAAGAAGATGATGAGGAAGGGGAGGAAGTAGAAATTGAAGGAGAATTCGATGAAGAGCTTGAAGAGGAAAATGACTATATAGCAAACTACTTTGAAGACGGTGATGATTACGGGGGAGGAAGTGATGAGAACATGGATGAAGCCACTTAttagcaaaaacaaagaaaagtacttaattaaaaagaaaaaccatgATAAATCATGCACAAGAAGTAATGCATCAATGCACTATAAAAAGCACTTGATTTAGTTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55253 lncRNA upstream 2801 17891951 ~ 17893273 (+) True G37433
XR_006251028.1 lncRNA upstream 281078 17593868 ~ 17614996 (+) True LOC122345748
TU55156 lncRNA upstream 368630 17526042 ~ 17527444 (+) True LOC122345691
TU55087 lncRNA upstream 538315 17354606 ~ 17357759 (+) True G37331
TU55088 lncRNA upstream 540268 17354606 ~ 17355806 (+) False G37331
TU55269 lncRNA downstream 119708 18019330 ~ 18019601 (+) True G37449
TU55300 lncRNA downstream 138510 18038132 ~ 18044460 (+) True G37475
TU55299 lncRNA downstream 139026 18038648 ~ 18044946 (+) False G37475
XR_006251053.1 lncRNA downstream 205477 18105099 ~ 18120648 (+) True LOC122345897
TU55326 lncRNA downstream 297581 18197203 ~ 18197542 (+) True G37490
XM_043239047.1 mRNA upstream 302388 17591913 ~ 17593686 (+) True LOC122345176
XM_043239052.1 mRNA upstream 309722 17554410 ~ 17586352 (+) True rasa1a
XM_043240097.1 mRNA upstream 368721 17526024 ~ 17527353 (+) False LOC122345691
XM_043238292.1 mRNA upstream 519065 17374852 ~ 17377009 (+) True LOC122344741
XM_043240455.1 mRNA upstream 521826 17373273 ~ 17374248 (+) True LOC122345919
XM_043240614.1 mRNA downstream 7786 17907408 ~ 18012794 (+) True adgrv1
XM_043240149.1 mRNA downstream 462251 18361873 ~ 18369522 (+) True nr2f1a
XM_043240148.1 mRNA downstream 462271 18361893 ~ 18369522 (+) False nr2f1a
XM_043240789.1 mRNA downstream 749143 18648765 ~ 18675929 (+) False slf1
XM_043240788.1 mRNA downstream 749145 18648767 ~ 18676675 (+) False slf1
TU55097 other upstream 526306 17364869 ~ 17369768 (+) False LOC122344991
TU54920 other upstream 1334333 16486620 ~ 16561741 (+) True G37228
TU54916 other upstream 1335342 16484002 ~ 16560732 (+) False G37227
TU54918 other upstream 1335342 16484002 ~ 16560732 (+) True G37227
TU54012 other upstream 3175587 14718532 ~ 14720487 (+) True G36640
XR_006250965.1 other downstream 943197 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other downstream 943197 18842819 ~ 18847665 (+) False arsk
TU55500 other downstream 1039191 18938813 ~ 18940895 (+) True G37626
TU55503 other downstream 1039191 18938813 ~ 18940895 (+) False G37626
XR_006251073.1 other downstream 1062700 18962322 ~ 18999279 (+) False msh3

Expression Profile