RNA id: XM_043240788.1


Basic Information

Item Value
RNA id XM_043240788.1
length 3504
RNA type mRNA
GC content 0.47
exon number 19
gene id slf1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18648765 ~ 18676675 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATTTGCTAACGTTATAATATTGTCCTCGTTCGTTGTTTTTACTTCATAAATGACCACTCTTTTATTTTAGCCGTATATATAGTACTTTTCATTGGTATATGCACCGCAAGTTAGGGACAGTAGTGTTTATGTGAGTTTGAACATATTTGTCCCCCCTAATAACATACAGTGGTCAGGCAACACACGGTACGCTAGTTTTGAAGTGCGACTGAACTGAGCGAAATGACAGAAACAACGAAAAGCAGAATTACCTAATCCATCGAATCGTACAGTTAGCTTCACGTTAAGcaagttttgtgtttgttttatatactgTAAGAATGGTGTCGCTCGATAAAATGTCACTTTATGTAGACGAATGGTCAGTGATGACATTTGGCGCGCCGTTGTCGTAAGAGCGAGATCAAACTGTAATTCATCATATCCAAGTGATTTCTCGGTTTTCAGTTTCAGGATGGTGGACAATAAATACATCTTTCAGATGTCTGGCATCAAGAATCATTCCCAGAAACGACAGTTACTCCAAGGCATCAGAAAGCTGGGGGGCTTATATTTTGGGGGTTCTGATTATAAGGAGGCAACGACACACCTCGTCGTCCAAAAAGCTTTAGCAAGTGAAAAGTTTATCGCAGCCTGTGCTGGAGGGAAGTGGATAGTAACTCCAGAGTTTGTTCTGGACAGTGTGAATCAAAAAGCGTGGCTCCCAGAGGCTTCGTATGAATTAAACTTAACAGCTCAGACCCCTGAAACAGCCAATCCACTGAAGACATGGAGAGAGCGGGTGTCCAATGGCACCGTGACTGGAGCTTTTCAGGACTGGGTAGTGCTCATTGACATTAATGATTCAGCGAGGAGAAGCGTGTTTATCAGGATATTAAAAGCAGGCAGAGCTGTCGTCATCACAGACTGGTCAACTTTATGTGATGTAACTCATGTGATAACCACTAATACGTCAAAAGATAAAGACGAGGAGTGCAGAATCCCTCACTATAGTCTGAGCTATGTAGCCAAGCATCTTTTTGGgCATGTTTGCTCCGAGTTAAACTGGTCCAGTAATTTGGAGTCCTTCGATGGAGAAGAGAGCTGTGAAATGGCTGTTGATGCTCCTGCAGTCATTGAGTCTATGGATGTTACTGATGACCTTTCACAAAAAGATTTGGAGGAAATGCTCAAAGAACACATCATAATAATGGAGAAGAAAATGCTTTTGACAGTCCCAGAATTCTACAGCTACTATACACCCAACCTGCCAGTTCAGATTCTAGCGGCAGACTTCAGCAATGTGCAGAGCTTGGTGGAGTGTGCCTTCTTCCCTCAAGCTCTGGAGGAGATCCTGGGGTCCCTGCAGCCTGGAGTGATGCCACCAGCCCCGCTGCTTCAACAGCTAATGCACCATGCActgcatGGTGAGGCAAAGCCACTGTACTTCAGCATGTTTATCACAGTTCTCCACAGTATCCTGCGCAACAATCCTACCTGGGGTTCTCCCCGACACGCTAAGTACTTTCTTCAGATCCTCCAGTGTCCAGAATGCAAGGACGGCCTCTGGTCACTTCTTGAAACATCAGTTCGAGTGTGTCTAGGAAACGAACCCACCTGTCACTCACTGCCAAGCCCACCATCCACCGAGTTGTTTCGTCTCCATTGTAACCTGCAGGAGTTCTTCCTGAGACTCTTTCAGCTGGAGCTTCATGCTGCTAGCTCAGGGAGGTCACCTGGAAGCAGTCGGGCATCTGTTCTGTACAGTACCTTCTGGAACATGTGGGAGAAGTCCACTCTGAGCTCCAGGGCTGTTCAGCAACTCAGCAAGCTGCTGATAAAGACTGTACTCTGGGCTTTCAACTCCGCTCAGgagTGGAGGCTGGGAATGTCGGTCACTCTGCAGGAGACTCTGTGTGTAGTGGTGGAGTTCTGGGCTCAGGAACACAGTCCGCTCAACAGCAGTCTGGTGGAGAAAAGGTTTAAAGACCTGGCAGAACACATTGCCATACTGTGCCAAGATGTACGCGGTGACATGCTGAAGGAAGTGATTCCAGCCCTTCGATCTACAAGACTCCGGATGTTCACTGCCAACGCCATCTATAGAAACATCTGCTGCAGCAGAGGCCTGATCCTCGGCTCCGAACCACTCTGTCTGCTCACAATTGTCTCAACCTACGTAAAAACTCTGGGGATCTTGTGTGATCAAGAACCAGTCCAAACCCTGAAGGGACAGACTGACAGAACAGAGATGAATCAAGCCTCTACTAGTGTTGCCCATGTGCCAGACTCAGAAGCTGTGAAAGACTCAGCAGGCGGCTCAGATTCAGGGAGAGAGGCTGTCCCGAGAGGTTACCACAGAGTCAATGCTGCAGGCGAGACACTCCTTCATCGAGCCTGCAAGAGGAACCAGGTGGAGAAATTGCTTCGTAGCCTCAGCGTGCCTGGAACAGACGTCAACATTAAAGATCACGCTGGTTGGACGCCCCTTCATGAAGCCTGTAACCATGGCAGCACAGAGTGTGTGAAGGCCCTGCTCCAGCACTGCCCCAATCTACAGCTGGGCAGTCAGGTCCAGGGAGTCAGTCCGCTACACGATGCCCTGCTGAACCGACACACAAACATCGCCAAGATGCTGCTGCGACACGGCGgCTCTCCTCTTCTGCAGCTGTGCGACAATAAAGGTCAGACCCCTCTGGACCTTGTCTCTTCGGAGGCCTTACGTGACGAACTCCTTCGCTGTGCAGAAAAAGGTGACAAAGCTCTGGACGCTCCCTGCTTTGAGGTTAGGGATCCACCGTTCATAGAGTCTTGCTCATGGGTGCTCAGCTGCCTGTTCCTCTCCTACCTCCAAGACCGACACATACCTACTTACAAATCCCCTCTTACACCTCTCCACCTCAGCCCCACTGTGTGTCGCACCCTGATCCGCCTCCGTCCAGATGAGCTAGCCTCCAGCTGGGGAGATTCCCGTGCCAAGACCCTGgctaaggacctgaggactgtgTTGATTTTTGAACAGTATTGGTCACAAATGAGCCCAGCGCTGAGACGCTGTCATGGGGATCAAACCAGACTGTTCGTGCAGCTGCTTGACGATCTGCAGACGGAGGGGGCAGCTCTGATCACTGGACGATCTGATTTTGACTAGTTCCAAGAGACTGTATAAAGGGTCTGTCTGTGGATCCAGTGGTTAAAGCTCCGCCTGTTGGTAAATCACTGGTAAAACTTCTTTCCTGGTGTGGTTAGTGAGTTTTGAATTTCACTCTGACAGCATAGCGTGCTTGCTGTTGTGATTCTGCactttatatgttgttttttggtTCGTTTGGGGATcgtttgttttttgcatgtgtaaaaatatttttgtaaaacactagaaaaaaatgttgaatattattttttagtagGCTAAATAGTATTTTACGAAAGTGGCTATTCTTAataattttcttcatttgtttcctaaaattgtaatatttaaaaagcacaatgaatgaaaataaagataatttgaACCgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55333 lncRNA upstream 258701 18373499 ~ 18390066 (+) True G37497
TU55340 lncRNA upstream 260765 18386010 ~ 18388002 (+) False G37501
TU55341 lncRNA upstream 260765 18386010 ~ 18388002 (+) True G37501
TU55331 lncRNA upstream 295302 18350686 ~ 18353465 (+) True G37495
TU55328 lncRNA upstream 368974 18279536 ~ 18279793 (+) True G37492
TU55385 lncRNA downstream 1921 18678596 ~ 18750055 (+) True G37540
TU55490 lncRNA downstream 246627 18923302 ~ 18924676 (+) True G37618
TU55491 lncRNA downstream 248535 18925210 ~ 18925433 (+) True G37619
TU55492 lncRNA downstream 248762 18925437 ~ 18927002 (+) True G37620
TU55663 lncRNA downstream 611341 19288016 ~ 19288328 (+) True G37734
XM_043240149.1 mRNA upstream 279245 18361873 ~ 18369522 (+) True nr2f1a
XM_043240148.1 mRNA upstream 279245 18361893 ~ 18369522 (+) False nr2f1a
XM_043240614.1 mRNA upstream 635973 17907408 ~ 18012794 (+) True adgrv1
XM_043240159.1 mRNA upstream 749145 17896074 ~ 17899622 (+) True polr3g
XM_043239047.1 mRNA upstream 1055081 17591913 ~ 17593686 (+) True LOC122345176
XM_043240790.1 mRNA downstream 129309 18805984 ~ 18814930 (+) True fam81b
XM_043240550.1 mRNA downstream 156140 18832815 ~ 18842452 (+) True nol6
XM_043238784.1 mRNA downstream 166144 18842819 ~ 18847182 (+) False arsk
XM_043238781.1 mRNA downstream 171261 18847936 ~ 18867441 (+) True cert1a
XM_043238782.1 mRNA downstream 171261 18847936 ~ 18867441 (+) False cert1a
TU55097 other upstream 1278999 17364869 ~ 17369768 (+) False LOC122344991
TU54920 other upstream 2087026 16486620 ~ 16561741 (+) True G37228
TU54916 other upstream 2088035 16484002 ~ 16560732 (+) False G37227
TU54918 other upstream 2088035 16484002 ~ 16560732 (+) True G37227
TU54012 other upstream 3928280 14718532 ~ 14720487 (+) True G36640
XR_006250965.1 other downstream 166144 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other downstream 166144 18842819 ~ 18847665 (+) False arsk
TU55500 other downstream 262138 18938813 ~ 18940895 (+) True G37626
TU55503 other downstream 262138 18938813 ~ 18940895 (+) False G37626
XR_006251073.1 other downstream 285647 18962322 ~ 18999279 (+) False msh3

Expression Profile