RNA id: XM_043239538.1


Basic Information

Item Value
RNA id XM_043239538.1
length 2634
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC122345419
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2270213 ~ 2277034 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGGATTATTTGGAAAAGCCACAAGTTGCTAGTGTACTGTACAACACTCCTCCTTACAGCTGGTTTGTCTTCGTCTCCAGGAAATCAGTTGAAACCTGTTCCGAGCAAAATGGCTGCAATATGCTGCGTTTAACCCTCGAGGATTTTCAGACGCGCCGCTCGGAAAGTCGCATGGTGTTCGCCACAGTTGAAGAGTCGAATGGGATttttgtgagtgtgagtgatCGCTGGCGAGCTCTAGGCCCTTCAGTGATGCCTCGGACCGTCGTGAGATCCTGAGCCGATCAGAGCTCCGCTTTACAGAGCTGGATACTCCGCGTACTCCAGGAAGAGAGAAACCTGGCCACTGAGTTTATGAGCAGCCTGGAGAGAGACAGGGAATCATGCTGCCTCCGTCAAGAAGGGATTTTGTATCTCTGACTCTCAGCGAAAGTGGCAGCTACACCAACAGCAAGCAATGGCGGCGGCAGTCGTGCTGGAGAAAATGGAAACAGCTGTCCAGATTGCAGCGCAGCCTGATCCTGTTTACACTCATGCTGTTGTTGGTTTGTGGAATTGCCACATCTCCCACTCTTATAGGGCACTGGAGAGATGGTGTGGTAGCGGAGAACGAGAATGATGGAAAACAGCCATTTGTCGTCAACCTGAAAAATGAGTACAAGTCCATTCTTCACGAGCCACCCTCTGAGAACCGTtttcaaaccaaaacaaatgtttcGAGTCTGTTGGGAGTAGAAAATCAGGAACTGGACCTGAAGAATGCAGATAAAGGATCTGAAGGAGGAAAGCCAATCATTAGTTGGCGTGGAGCTGTGATAGAAGAAGAACAGGCATCTGATACTGACACCAAAGACACAGAAATCCAAGACGACGCAGCTTCATTAGCACttgcTGAGAGCAGATTGGAGACTGTAAGGGAAGCCTTAAGACATGCCTGGAAGGGTTACAAGAACTTTGCTTGGGGTCACGATGAGCTAAAACCAATCTCTAAATCATATGGAGAGTGGTTTGGACTTGGGCTGACCCTAATTGATGCTCTGGACACCATGTGGATCTTGGGTCTCAAAGAGGAGTTTGCAGAGGCCAGGGAGTGGGTGGCCAAAGAGCTCTCCTTCGATAAGAACGTGGATGTTAATCTGTTTGAGAGCACCATTCGTATACTGGGTGGCCTTCTGAGTACTTACCATCTCACCGGAGACTCCTTGTTCCTGGAAAAAGCTAAAGATATTGGCTCCAGACTGATGCCCGCCTTTACCACTGCCTCAAAAATCCCCTATTCGGATGTGAATATAGGCAAGGGGACGGCTCATCCACCGCAGTGGACTTCAGACAGTACCGTAGCTGAGGTCACCAGCATTCAGCTAGAATTCAGAGAGCTCAGTCGACTTACCGGAGACCCCAAATACAAGCTGGCTGTAATGGAGGTGATGAAGCAGGTGCATAATTTGGATGGAAAGCAAGATGGGTTAGTGCCGATGTTTATCAATACCAACAACGGGCTGTTCACGCATCAGGGCACTTACACATTGGGCGCCAGGGCTGACAGCTACTACGAGTACCTACTGAAGCAGTGGATACAAGGAGGCGAGACTGAGAATGAATTGCTGGATGACTACCTCCTGGCTGTGGAAGGTGTGAAGAAAAACCTCCTGAAAAAGTCCACTCCTTCTGGCCTTACATTTGTAGGAGAACTGTCCCATGGCCACTTCAGTCCCAAAATGGACCACTTGGTTTGTTTCCTGCCTGGCACACTTGCACTTGGGGCACATTACGGCCTTCCTGCTGATCACATGGAGCTGGCAAAACAGCTGATAGAGACTTGCTACCAGATGTACGCCCAGATGGAGACGGGTCTGAGCCCGGAGATAGCTCATTTCAACATGCATGAGAGCAGCACACAGGATGTAGATGTAAAGATTGCAGACCGACACAACCTTCAAGTGCCAGAGACTGTAGAGAGCCTCTTCTACATGTACAGGTTCACTAAGGATAAGAAGTACCAGCAGTGGGGCTGGGAGATCCTTCAGAACTTCAATAAGTACACAAGGGTTCCCACCGGAGGTTATACGTCTATAAACAACGTTCGTGACCCAGCCAATCCCAATCCTCGAGACAAGATGGAGAGCTTCTTCCTGGGTGAGACACTCAAGTACTTCTACCTGCTGTTTTCCAATGACTCAGACCTTATCAGCTTAGACAAGTACATCTTCAACACTGAAGCCCATCCTCTGCCAATATGGCCACAAGCAGAGTGAAGCACCCGCGAGCGCACGTGCATAACCAAACACACCTCTCTCAGGGCCATGAACACATTTGATATCCAAACTGCCATGTTTTTCTACACTATGAACTCTTTGTAATCGAAAGTAACTAACtggtgaaaaaaaagttaaaatagccATGACAGAAACTGTTTGTAGATGTGTAGTTTCTGATTGTACTAGTTATCTGTATGTTTCTATTAATAGAGTTTCTGAATTTTTTACTCTATTTATGCTATCGTGATGCTGTCGATCAGCTATTGAATCATTATGTGCAGTCTTTTAGCCCAAGCACACGGACAAAAATGTTCATACTGTGAAACCGTATGGGGACTGCAAGCACTTTATGGTGTGTTTTGAGGTTttagtgt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48177 lncRNA upstream 26326 2243667 ~ 2243887 (+) True G32702
TU48168 lncRNA upstream 192780 2076954 ~ 2077433 (+) True G32694
TU48167 lncRNA upstream 194168 2074389 ~ 2076045 (+) True G32693
XR_006250943.1 lncRNA upstream 240887 2023363 ~ 2029326 (+) True LOC122344883
TU48099 lncRNA upstream 271533 1998179 ~ 1998680 (+) True G32649
TU48229 lncRNA downstream 141343 2418377 ~ 2420831 (+) True G32737
TU48260 lncRNA downstream 301552 2578586 ~ 2579783 (+) True G32765
TU48244 lncRNA downstream 321216 2598250 ~ 2599639 (+) True G32749
TU48269 lncRNA downstream 331182 2608216 ~ 2609601 (+) True G32770
TU48271 lncRNA downstream 350050 2627084 ~ 2641100 (+) False LOC122345783
XM_043240758.1 mRNA upstream 5628 2249658 ~ 2264585 (+) True LOC122346086
XM_043240752.1 mRNA upstream 62668 2178583 ~ 2207545 (+) True LOC122346081
XM_043240123.1 mRNA upstream 251063 2010217 ~ 2019150 (+) True LOC122345711
XM_043240708.1 mRNA upstream 352761 1906927 ~ 1917452 (+) True LOC122346053
XM_043240703.1 mRNA upstream 364931 1900627 ~ 1905282 (+) False LOC122346050
XM_043239485.1 mRNA downstream 251468 2528502 ~ 2531593 (+) True LOC122345384
XM_043239486.1 mRNA downstream 251541 2528575 ~ 2531593 (+) False LOC122345384
XM_043240235.1 mRNA downstream 362122 2639156 ~ 2649361 (+) True LOC122345783
XM_043240245.1 mRNA downstream 439979 2717013 ~ 2725424 (+) True LOC122345789
XM_043239008.1 mRNA downstream 482321 2759355 ~ 2795560 (+) False hk2
TU48185 other upstream 2019 2265145 ~ 2268194 (+) True G32706
TU48087 other upstream 251754 2010411 ~ 2018459 (+) False LOC122345711
TU48080 other upstream 364925 1901458 ~ 1905288 (+) False LOC122346050
TU48056 other upstream 427200 1835148 ~ 1843013 (+) True G32620
TU48046 other upstream 444099 1822654 ~ 1826114 (+) True G32611
TU48610 other downstream 1328152 3605186 ~ 4144396 (+) False G33015
TU48613 other downstream 1328152 3605186 ~ 4144396 (+) True G33015
TU48849 other downstream 2345473 4622507 ~ 4623060 (+) True G33174
TU49128 other downstream 3327299 5604333 ~ 5649885 (+) False G33355
TU49131 other downstream 3327299 5604333 ~ 5649885 (+) True G33355

Expression Profile