Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000891 |
| length | 554 |
| RNA type | processed_transcript |
| GC content | 0.51 |
| exon number | 4 |
| gene id | XLOC_000507 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 42224769 ~ 43039672 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0098609 | cell-cell adhesion | biological_process |
| GO:0048813 | dendrite morphogenesis | biological_process |
| GO:0048854 | brain morphogenesis | biological_process |
| GO:0051823 | regulation of synapse structural plasticity | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0030424 | axon | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0005912 | adherens junction | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| GO:0051015 | actin filament binding | molecular_function |
| GO:0045296 | cadherin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060815-3 | Predicted to enable several functions, including actin filament binding activity; beta-catenin binding activity; and cadherin binding activity. Predicted to be involved in several processes, including brain morphogenesis; neuron projection morphogenesis; and regulation of synapse structural plasticity. Predicted to act upstream of or within actin filament organization; cell differentiation; and epithelial cell-cell adhesion. Predicted to be located in adherens junction; axon; and cytoplasm. Is expressed in female organism. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations. Orthologous to human CTNNA2 (catenin alpha 2). |
| ensembl_id | ENSDART00000137609 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003112 | lncRNA | upstream | 436694 | 41983357 ~ 42026604 (+) | True | XLOC_000505 |
| TCONS_00000883 | lncRNA | upstream | 512949 | 41949303 ~ 41950349 (+) | True | XLOC_000504 |
| TCONS_00003111 | lncRNA | upstream | 584406 | 41878443 ~ 41878892 (+) | True | XLOC_000502 |
| TCONS_00000876 | lncRNA | upstream | 605549 | 41849273 ~ 41857749 (+) | False | XLOC_000501 |
| TCONS_00003110 | lncRNA | upstream | 666182 | 41765656 ~ 41797116 (+) | True | XLOC_000500 |
| TCONS_00003114 | lncRNA | downstream | 1016954 | 43900011 ~ 43946307 (+) | False | XLOC_000512 |
| TCONS_00003115 | lncRNA | downstream | 1017032 | 43900089 ~ 43946307 (+) | False | XLOC_000512 |
| TCONS_00003116 | lncRNA | downstream | 1019399 | 43902456 ~ 43946307 (+) | True | XLOC_000512 |
| TCONS_00000899 | lncRNA | downstream | 1057775 | 43940832 ~ 43943159 (+) | False | XLOC_000513 |
| TCONS_00000898 | lncRNA | downstream | 1057845 | 43940902 ~ 43943154 (+) | True | XLOC_000513 |
| TCONS_00000890 | mRNA | upstream | 72078 | 42345532 ~ 42391220 (+) | False | XLOC_000507 |
| TCONS_00000881 | mRNA | upstream | 538814 | 41886830 ~ 41924484 (+) | False | XLOC_000503 |
| TCONS_00000880 | mRNA | upstream | 538814 | 41886830 ~ 41924484 (+) | False | XLOC_000503 |
| TCONS_00000882 | mRNA | upstream | 542704 | 41898919 ~ 41920594 (+) | True | XLOC_000503 |
| TCONS_00000874 | mRNA | upstream | 597312 | 41849152 ~ 41865986 (+) | False | XLOC_000501 |
| TCONS_00000896 | mRNA | downstream | 803194 | 43686251 ~ 43692141 (+) | False | XLOC_000511 |
| TCONS_00000897 | mRNA | downstream | 803278 | 43686335 ~ 43688581 (+) | True | XLOC_000511 |
| TCONS_00000900 | mRNA | downstream | 1120597 | 44003654 ~ 44009286 (+) | True | XLOC_000516 |
| TCONS_00000901 | mRNA | downstream | 1170584 | 44053641 ~ 44062209 (+) | True | XLOC_000518 |
| TCONS_00000902 | mRNA | downstream | 1173072 | 44056129 ~ 44064229 (+) | True | XLOC_000519 |
| TCONS_00000884 | other | upstream | 368559 | 42094624 ~ 42094739 (+) | True | XLOC_000506 |
| TCONS_00000875 | other | upstream | 603566 | 41849241 ~ 41859732 (+) | False | XLOC_000501 |
| TCONS_00000878 | other | upstream | 604262 | 41849306 ~ 41859036 (+) | False | XLOC_000501 |
| TCONS_00000877 | other | upstream | 604408 | 41849306 ~ 41858890 (+) | False | XLOC_000501 |
| TCONS_00000853 | other | upstream | 1193411 | 41269773 ~ 41269887 (+) | True | XLOC_000489 |
| TCONS_00000894 | other | downstream | 341420 | 43224477 ~ 43224591 (+) | True | XLOC_000509 |
| TCONS_00000895 | other | downstream | 382066 | 43265123 ~ 43265241 (+) | True | XLOC_000510 |
| TCONS_00000911 | other | downstream | 1339165 | 44222222 ~ 44227454 (+) | False | XLOC_000523 |
| TCONS_00000933 | other | downstream | 1624077 | 44507134 ~ 44507253 (+) | True | XLOC_000540 |
| TCONS_00000938 | other | downstream | 1676394 | 44559451 ~ 44565346 (+) | True | XLOC_000541 |
