RNA id: TU187018


Basic Information

Item Value
RNA id TU187018
length 2000
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G138231
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1298354 ~ 1368873 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtgtgtgtatatgtgtgtgtgtgtgtgtacgcaacAGATAATTGTGTACACATCGCTCAGGGTGATTTTAGAGACTGTCTGAACTTTGACCCCCGGTTCAGGTTCGCTCTCAGTGATGGAAACGTCCGCAGAtttgggaaaacaaacaaaggaaatCCGGAAGCGACGGTCCGTCCTGCTTAATATAAAAGAGGTTCAGTTTTCAATTCAACCCAAATAAAAACGGCAGCAGCAGATTATCCAACAGctgggagacagagagagagacaggtagagagagaagagagaatgtGGGAAGAGATGCTGAATTTCACCATTCCACCCTTTAATCTGCTGGAGAACCTGTAGAGAAACGCAGACGATGTTAGAGGATGCTGCAGACGGCTGCGCTGATGCTGCTGCGGCTGCGCTGTGAACAGACTGGGGTTAAACTGTGCTAAAATAGTTCTGGAGGAGGGTTTTTCATAAAGGTGATAAAACAAATCTGAATTATCTGCAGTAATTCAGTGAGTCTGTACATTCCTTAAAGAGCCCATATCACAATAAAACCAATTCTGAGAATTCATAAGCTAGAAGTCTCTTTCActctattattttataaaataatactacataTATACGTAATATCTGTAGACATGGCAACacaaactaaatatttaatttgtcatttattttcaaGCTATTTTTCAATTGTCTAAATCATGAGGGAAAACTTCACATCTTGAATCTGAATCAGcacatgtttaaaaacacaattttcttTTCCTGTCTCGGCCTCTCTTACTCCTACACCCTACAAATATAATACTGTTTGTTTCTTCTGTTACTGTagcttaaatataaaatattactaatatataaatgtatataaactctaaatataagctctgattggtcagattgTGCCTTAATTCATGAAGCAGTATGggattttcagtattttgtctaagggtgagtttttagtgaagtttctccagcactaaggctggagcagcagctttagcattagcagagCGACTGCTAACTGCATGCCGCCcatcagctagcagttcatcatacatagcttgttttaacatggctaACACGCAGATTACAGTCCAATCAATATACTCGTCTTTGAATGGCGAAAAAGCTAGAGCTGCGGTTAGcgcctaatgctaatactgctgctgcaccaagccttagtgctggagaaacttcacagaAAACTCGTACATAgggcgcactgtcaatttttgggaaaatctatacatacataaaatataaaatgttggtGGCATGCAAGATATGGGCACTTTAACGTCTTTAACTCACAATATAACTTTAAATTTAACTCACAATATAGCACTGCAAGAATTTTTGTTAGCAAAAAGTGTCGAAatatagattaaataaaaattaatactaCCAATAATTTGTTAAACTCTTATGAAAAACCCTCCTTCAGGTTTGTCTGGAAGCTTCACcctgtaaaagagaaaagagttcagttataaaaacagtaaaaacacaaaagttCATCTCGCTGCAGCTTAAAAGCACGAGCCGCAGTCGCGCCTTTGTacagtttatgaaataaaaagctgTAAATGCTGTTTTAAACGGCTCCAGTGTGCGACAGAAACATAACAGCGGCTCTGCTGCCGATTACAAACCCTATAAAACGTTTAAAATAAGCTAACAGATCTAAACTGCTCAAAACTGTACAAATCACACAGCATACACATGATAAAACAGCAAATACTACATCCAAAAATACTTCACGCTTCAAATAAAGCTACTCACAGGTTTGATACAAACCTGATTCTGATCCAAAGACATTACAAGTCTTatcaatatacattataatatataagggTCAGCACTGCTGATACTCTTTCATACAAATCCATGAGATTTACGCTTTAAATCAAACCTCCCCATTTTTTGGGAGATGTAAAAGTGCAATAAGGAGTTGGGATAAACCCATGTTGTTTTAAACCAGGTAGAAActtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187014 lncRNA downstream 303 1298441 ~ 1336595 (-) False G138231
XR_002651003.1 lncRNA downstream 37732 1270811 ~ 1299166 (-) True LOC111194256
TU187003 lncRNA downstream 85961 1249712 ~ 1250937 (-) True G138226
TU186986 lncRNA downstream 117985 1217474 ~ 1218913 (-) True G138209
TU186970 lncRNA downstream 289500 1046296 ~ 1047398 (-) True G138198
TU187056 lncRNA upstream 120469 1489342 ~ 1489632 (-) True G138264
TU187058 lncRNA upstream 122055 1490928 ~ 1491686 (-) True G138266
TU187044 lncRNA upstream 139119 1507992 ~ 1509496 (-) True G138253
TU187060 lncRNA upstream 163127 1532000 ~ 1533564 (-) True G138268
TU187064 lncRNA upstream 199964 1568837 ~ 1570821 (-) False G138272
XM_022677756.1 mRNA downstream 234091 1090237 ~ 1102807 (-) True trove2
XM_022677748.1 mRNA downstream 310432 991893 ~ 1026466 (-) True tnn
XM_022677749.1 mRNA downstream 310434 991893 ~ 1026464 (-) False tnn
XM_022677750.1 mRNA downstream 310437 991893 ~ 1026461 (-) False tnn
XM_022677741.1 mRNA downstream 586318 718023 ~ 750580 (-) True pappa2
XM_022677761.1 mRNA upstream 86580 1455453 ~ 1487674 (-) True lmbr1
XM_022677762.1 mRNA upstream 122943 1491816 ~ 1497588 (-) True LOC111194257
XM_007229174.3 mRNA upstream 141760 1510633 ~ 1523685 (-) True dcaf8
XM_022677764.1 mRNA upstream 141760 1510633 ~ 1522531 (-) False dcaf8
XM_022677765.1 mRNA upstream 170230 1539103 ~ 1546999 (-) True LOC111194258
TU186973 other downstream 235405 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 629950 695903 ~ 706948 (-) False LOC111194217
TU187245 other upstream 1109908 2478781 ~ 2486751 (-) False LOC103042176
XR_002651005.1 other upstream 1681527 3050400 ~ 3062759 (-) True LOC103045355
TU187730 other upstream 2463848 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 2479127 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 2962777 4331650 ~ 4335889 (-) False LOC103034146

Expression Profile