RNA id: TU188058


Basic Information

Item Value
RNA id TU188058
length 415
lncRNA type intronic
GC content 0.43
exon number 2
gene id G138919
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4420864 ~ 4421595 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGCATCCCGATAAAACTACTATAAAACATCTTTTTACTCCATAAGAAGATCAAAAGTActtctaaagcaggggtgtccaaactttttttgttgcttaacagcgggccaactttcattctatttctaaaataccttgcgggccgctccaaaacaggaaatggcccgcgggccgtagtttggacacccctgttctaaagagagaggttttaatttattttttgaagcTCTTACTCAACTCTGACtctgactctttggcccgtttttctgtgctagaaatgtgcaccctttccacttttagactctttcgccccgtttttctgtgctagaaatgtgcaccctttccacttttagactctttcgccccgtttttctgcgctagaaatgcgcatcctcgccgcttttagactctttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188049 lncRNA downstream 23932 4396090 ~ 4396932 (-) True G138913
TU188046 lncRNA downstream 69738 4332394 ~ 4351126 (-) True G138910
TU187924 lncRNA downstream 186682 4179824 ~ 4234182 (-) True G138837
TU187888 lncRNA downstream 245268 4172979 ~ 4175596 (-) True G138822
TU187902 lncRNA downstream 258384 4162212 ~ 4162480 (-) True G138834
TU188186 lncRNA upstream 284618 4706213 ~ 4707525 (-) True G139011
XR_002651009.1 lncRNA upstream 330978 4752573 ~ 4754327 (-) True LOC111194275
TU188203 lncRNA upstream 399608 4821203 ~ 4838073 (-) True G139027
TU188206 lncRNA upstream 414187 4835782 ~ 4836531 (-) True G139029
TU188177 lncRNA upstream 417271 4838866 ~ 4854692 (-) True G139003
XM_022677863.1 mRNA downstream 39441 4362073 ~ 4381423 (-) False LOC103036275
XM_022677864.1 mRNA downstream 41811 4362073 ~ 4379053 (-) True LOC103036275
XM_022677862.1 mRNA downstream 60567 4349790 ~ 4360297 (-) False LOC111194273
XM_022677861.1 mRNA downstream 60567 4349790 ~ 4360297 (-) True LOC111194273
XM_022677860.1 mRNA downstream 82667 4332137 ~ 4338197 (-) False LOC103034146
XM_022677865.1 mRNA upstream 14218 4435813 ~ 4453369 (-) True LOC103025914
XM_022677866.1 mRNA upstream 38174 4459769 ~ 4475917 (-) True LOC103026217
XM_007250694.3 mRNA upstream 62638 4484233 ~ 4485985 (-) True LOC103036885
XM_007250696.3 mRNA upstream 108941 4530536 ~ 4545488 (-) True LOC103037397
XM_007250698.3 mRNA upstream 301791 4723386 ~ 4727528 (-) True LOC103038044
XR_002651007.1 other downstream 82667 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other downstream 82770 4335991 ~ 4338094 (-) False LOC103034146
TU188022 other downstream 84975 4331650 ~ 4335889 (-) False LOC103034146
TU187750 other downstream 569182 3848000 ~ 3851682 (-) False LOC103047802
TU187730 other downstream 587194 3832721 ~ 3833670 (-) True G138708
TU188266 other upstream 854511 5276106 ~ 5276468 (-) True G139074
TU188315 other upstream 908483 5330078 ~ 5330805 (-) True G139105
TU188844 other upstream 1587458 6009053 ~ 6010867 (-) True G139489
XR_002651012.1 other upstream 1601014 6022609 ~ 6054339 (-) False LOC111194281
XR_002651013.1 other upstream 1698524 6120119 ~ 6124125 (-) True LOC103026010

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU167513 True 6858 lncRNA 0.37 2 CI01000028 4587296 ~ 4594765 (+)