RNA id: XR_002651005.1


Basic Information

Item Value
RNA id XR_002651005.1
length 3300
RNA type misc_RNA
GC content 0.51
exon number 22
gene id LOC103045355
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3050400 ~ 3062759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCTGAGAAGAGATAGACAGCAACCATAACCTGTTAGAAGAGAGAGACAACTAAGAAATGAAGCGGTTCTGAAAgaaatttaatacttttaaaagtCTGAAAAGAAGGAAAGTGGTGGAAAATGTCTTCTGTTCCAGTACAGCAGCCCTCAGACTCGACGGAGTTCACAGTGGAGGCGGTGGAGAGGGCGCTGCAGCAGCTGTACTATGATCCAGACATGACCCAGAAAAACGTGGCCCAGAAGTGGCTGAGCCAGGCCCAAGCATCGCCACAAGCCTGGCTCTTCTGCTGGGCACTGCTTAGGCCTGATAAGGTTCCTGAGATTCAGTTTTTCGGGGCCAGTACTCTACACGCTAAAATCACCCGCCACTGGACGGACCTCCCTGCTGAGCAGCACGAGTCTCTGCGCTCCCAGCTCATCGCTGAGGTGGGTCGTTTCTCCTGCGGGCCAAAAATGGTTCTGACGCGGCTCTGCGTGGCTCTGGCTTCTCTGATTCTCCACAATCTGCTGGACAGTTGGACCACTGCGGTCCCGGACCTCCTGAGAGCGTTCCAGGGAGGCGAGGGGTCGGTGGAGGTGGATGTCAGGCACCAGGCACTGCTGGAGGTTCTGGTGGTGCTCCCGGAGGAGCTCCAGATCAGGAAGCTGCCTGCTGAACGTCGAGCTCATCTACAGAGAGCTTTAGCCCAGGAGTGGAGTTCACTTTGCCCTATACTGCGGCAGATCCTGCGCAAAGAGACTACAGCAGGACAGGTGAAAGAACGTGTGCTGAGGTGCCTTTCCTCCTGGCTGGCTCTGGATGTGGATCTGGGTGAAAGTGAAGGCCTTCTGCAGGACAGCTTTACGCTTCTAAAGGAGCGGGAGCTCTTTGACACGGCTGTGGAGACTCTCGTCAGCGCTATTTCACAGTGTGACTGCCAGAGGTTTGTTGACAGTCTGCTGAAGATGATGCCTCAGGTGTTGGCTCTTCAGGAGCCTCTGAAGAAATCAGTTCAGGACAGAGACATGGAGACATGTCATGGAATCTGCCGCATCGCTGTGGCACTTGGGGAAACTCATTGCAGgACTCTTCTGGAGCAGGTAGACCAGTGGCAGGGTTTCCAGGCTTTAGTTAGTATGATTCTGTCCTGCACTGGGATGCCTGGACATTACCCTGTGGATGAAACCTCCAGCTCCCTCACACTCACATTCTGGTACACGTTACAGGATGACATCATGTCTCTGGACACGGAGAAGCAGACGCTGTACCTGCAGGTTTACAGACCAGTTTACTTCCAGCTGGTGGAGGTGTTGCTGCATAAGGCTCGTTTCCCCAGTGACCAGGAATTCACCTCATGGTCATCTGATGACAAGGAGCAGTTCAGAACCTACAgAGTTGACATCTCAGACACTCTGATGTGCGTCTATGAGCTGCTTGGCCCGGAGCTGTTGCGTAACCTTTACGATAAACTGGGGGTGCTGCTGACGGACACCACACACTCGTCCTCGTGGCAGGATGTAGAGGCTCTGCTGTACGGGTTTCAGTCCATAGCTGAGACGGTGGACGTCAGTTACTCTGATGTCATTCCTGGTCTGATTGGTCTTATCCCTCTCATCACTGCTACCAACGTTCAACTGGCCGAAACCATCATGCTCACAATAGGGTCGCTGGCGGAGTGGCTGGCGGATCACTCCATCATGCTGGCCGGTGCTCTGCGTCTGGTCCTCCAGGCTCTATCCAACGCTGACCTCTCAGTCTCCACTGTCTCCACCCTGAAGAGGATCTGCCGTGAGTGTCGCCACCACCTGCGGCCTCACGCTAACGACATCCTGACAGCTTCACAGGAGGTTCTGGTTAAACAGATCCATAAGACCACTCAGATCATGTGGCTGATGCAGGCTCTGGGTTATCTGCTGTCATCTCTTCCTGATGAGGAGATTCTGGGGAAgctcctctctctgctctctccacACATCCAGCAGCTGGAGAGACTAGCCAACGAGACACCCAGTCCGGCTAGTAAACTCTCCACTCTTCACATTCTGGGCCTCATCTCCAGCATCTTCTCCACTTTAGACCTGAACACACAAAGAGAGGGACAGGAGGACAGCAGGAACTCTCACTTTCAGCCTCACGCCAACCCAgTTGTAGTCGTGCTACAGCAGGTTTTCCCTCTTATCCAGACTCTTCTGAGTAAGTGGCTTAAGGAGACTGAGGTAGTGACGGCTGCCTGTGCTGTTTTTGAGAAATCCCTAAAGACCCTCATCCGTGACTTTGCCCCCCTTGTTGATCagctctgtgagctgattggtcagTTGTTCAGCTCTTATCCACAAGCCTGTGCTTTGGACCTCACACGACAGTTGGTTCATGTATTTGCCTGTGAAAAGGAGCATTTCCCACCAATTGCAGCTCTTCTAGAACTCGTCACAAGCATCACCATGGCAATTTTTCAGCATGGTAAGACttctacacttaaaaaaaagGTGCTCGAGATCATCCTGATGTGGCAGACTCATTCATGCAGCTTCACACACAGGTTATGAAAAGGAAGCCTGATGTGTATCTTACAGGGGGTCTGGATATAAAAGTGGTTTTCTATTGTGGGATTTTATCATTCAAATTTCCAGAGACGCCTACTGTGAAGTCTActtgtttattatttACAGAGCTGATTTCTCACTGTGAGGATCTACCAGAGGTGAGGGAAGTGCTACAGGAGGATGGTCTTCTGCTGCTCCAGACCCTGCTGGAGTCTATTGGAGGTCAGTCCCGTGGACTGTTGGAGCACCAGTCTGAGGTGATGTTCTCTGTGAGCCGTTACTGCCCCACCCTGCTGTCACTCCAGCTCAGAGACGCCCTGCAGCCCCCCGGCTTCCCCAGCGCCCTCCTCACCCCAGAGCAGAAAGAGCACTTCTGTCAGCAGGTCCTCAGaGAACAACTGAGCAAGTGGAAGATGCGGGACGTCATAAAGgagttttctctgctgtgtcAGGGCCTGCCGGGAGTGGAATATGCAGCCAGTTATTAAAGCCCAGAGTAAAaacaatacacattttataatgGACACAAGGCCCGAAGGAGAGAAGATAAGTGACGATGCACTTTCAGATTAACCTGGATGCGCTGGCCTGGACTGGTTGAAGCTGAACGTTGAGcagtttaaatattattatatgtttgaTTTTAGTAAACTgttggttttggttttgttttttgaccAATTTTGTACTacaactaccgtatttttcgcactataaggtgcactaatcCATTAATTTTCCCAGATATaaccagtgcaccttataatccagtgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187392 lncRNA downstream 27028 3022115 ~ 3023372 (-) True G138493
TU187334 lncRNA downstream 194582 2768999 ~ 2855818 (-) True G138446
TU187340 lncRNA downstream 201198 2847558 ~ 2849202 (-) True G138452
TU187341 lncRNA downstream 201198 2847558 ~ 2849202 (-) False G138452
TU187338 lncRNA downstream 261291 2788375 ~ 2789109 (-) True G138450
TU187409 lncRNA upstream 32842 3095601 ~ 3114602 (-) False LOC103025790
TU187408 lncRNA upstream 47538 3110297 ~ 3114602 (-) False LOC103025790
TU187430 lncRNA upstream 88162 3150921 ~ 3156055 (-) True G138515
TU187509 lncRNA upstream 93992 3156751 ~ 3160936 (-) False gipc2
TU187521 lncRNA upstream 131834 3194593 ~ 3198484 (-) True G138563
XM_007250652.2 mRNA downstream 16332 3029732 ~ 3034068 (-) True LOC103023705
XM_007250651.3 mRNA downstream 21306 3025242 ~ 3029094 (-) True LOC103023383
XM_007250649.3 mRNA downstream 43734 3000121 ~ 3006666 (-) True LOC103022773
XM_007250648.3 mRNA downstream 50361 2996554 ~ 3000039 (-) True c16h1orf123
XM_007250647.3 mRNA downstream 54093 2982986 ~ 2996307 (-) True scp2
XM_022677691.1 mRNA upstream 8391 3071150 ~ 3082049 (-) True LOC103045647
XM_022677823.1 mRNA upstream 21983 3084742 ~ 3086475 (-) True LOC111194268
XM_007250657.3 mRNA upstream 26632 3089391 ~ 3099890 (-) True LOC103025183
XM_007250659.3 mRNA upstream 47643 3110402 ~ 3114686 (-) True LOC103025790
XM_022677826.1 mRNA upstream 57220 3119979 ~ 3150877 (-) False LOC107197653
TU187245 other downstream 563649 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 1948907 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 2343452 695903 ~ 706948 (-) False LOC111194217
TU187730 other upstream 769962 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 785241 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 1268891 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 1270374 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other upstream 1273232 4335991 ~ 4338094 (-) False LOC103034146

Expression Profile