RNA id: XM_022677850.1


Basic Information

Item Value
RNA id XM_022677850.1
length 2247
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC111194272
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4105554 ~ 4121993 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagaaactcatctgtttttaagtggtcttttaattttttttctagagctgtatatatatttggatCCCCCAGTTGAAAGGggaggttctctctctctctcctctctctctctctcctgctgtgTTTGTCTGTACAGACCTCCCGAAATAGACAGTGGAACTGGAGAAGCCGACTGTCCTCTGTTTGGAAAAACATCTCAGAATCTCTCCGTCATCTGGGATTGCAACACGACTCAACCCTGGTGCTGTACCTCGACAGTTCACTCTGAGCCTGCAGCTTTCTTCTCCTCAGCTACACTTTTAACATCTCGGCCAACGGTTAACTCTCTATCTGTCTGCTGTCACTCTGTCACTCTGGAGCATGAAGCAGAAGCTGCTAAATATGGGACGAACGATATGCCCCCCATCCCGGGTGGAATCGGACCCGGACCTGAAGGCCCCGGCGGGCCCCGCTTCAGGTCCTCAGGAAGAGAAGATGGTCATGAGGAGGGAGATTTCTCTGACGAACGGTATCTGCCTCATCGTGGGGAACATGATTGGCTCGGGCATCTTCGTTTCCCCCAAGGGCGTGTTGCTCTACAGCGCCTCCTACGGACTGTCCCTGATCATCTGGGCTCTCGGGGGCATGTTCTCTGTGTTTGGTGCACTGTGCTATGCTGAGCTGGGCACCACCATTACCAAGTCTGGTGCCAGCTACGCCTACATCTTGGAGGCGTTCGGTGGATTTCTGGCCTTCATCCGCCTGTGGACCTCGATCCTGCTGGTGGAGCCGGCGAGCCAGGCCATCATCTCCTTGACTTTTGCCAACTATCTGGTAGAAGCGCTTTACCCCACCTGCCAGCCACCGTACGACGCTGTGAGACTCATCGCTGCAGCCTGTCTGTGTATGCTGATCTTCATAAACTGTGCGTATGTGAAGTGGGGTACCCTGGTCCAGGATATCTTCACTTACACCAAGATCATGTCCCTCATCCTCATCATTTCAATTGGTGTCATCAAGATAATGAgagGAGAAACCAAGAACTTTGAGAATCCATTTGAAGGTTCTGCCATGGATACTGGCAGCATCGCGCTGGCTCTGTACTCGGCCCTGTTCTCCTACTCCGGCTGGGACACACTCAACTTCGTCACTGAGGAGATTGTGAACCCGGAGAGGAACCTGCCTATAGCCATTGCCGTCTCTATGCCGATAGTAACCATCATCTACCTGCTGACGAACGTGGCGTACTATGTGGTGCTGGACATACCTTCCTTTATGGATAGTGAtgcagttgctgtgACATTCGGGAATCAGGTGCTGGGACCCATGAACTGGATCATTCCTATTGCTGTGGCTATGTCCTGCTACGGAGGACTTAACGCCTCTATCATCGCTGCCTCAAGGTTGTTCTTTGTGGGGGCGAGAGAGGGTCACCTCCCCGACAGCCTGAGTCTGATCCATGCTGAGCGCTACACTCCTGTCCCTGCACTTCTCTTTAACggcGTGATGGGGCTGATTTTCCTCTGTGTTGAAGACGTTTTCCAGCTCATCAATTATTTCAGCTTCAGCTACTGGCTGTACGTGGGTCTGTCTGTTGCCGGGCTCATCTACCTGCGCCACACAcagccagacagacacagacCTGTCAAGcTCTCCCTGTTCTTCCCCTATATCTACTGCGTGTGCAGCCTGTTCTTGGTCATTGTGCCTCTCTACAGTGACACAGTCAATTCCCTCATAGGAATAGCTATCGCACTGTCCGGCGTGCCCGTGTACTACTTCTGTATTTACTTACCAGAGGAAAAGAGGCCCAAATGGGTCAGCCGGCTTAATGCCACCGCCACAAAATACACTCAGATCATGTGCCACTGCTGCCTGACTGACCTGGACGTGGAGCCAGAGAATATGGCGGAGAGCAAGAACCAGTAATCTCAACACGCAGGGATTTTATACTTTTGACGTACTGTTTCTGAGATATTTGAAGATTCAGAGCTTCCACAGTGATGAACGTGATCGCTGATGGCACTGTGTTTCCAGCTCATGAAAGAACCCTTTTTGTTCTCGTCCAGAGAGGCACTGGACATTTTTACAGATGTACAGGTTGTTGGTTCTCCAGTTATTAATTTGCACATTAGCtggtattttacagtatttatagaattgtgttatatttttcaACTCAAAACGAGAATATCATATggtagtgcatctcaaaaaataaatcaagttactttttttcagtaattcagttcaaaatctgaatatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187866 lncRNA downstream 28088 4075500 ~ 4077466 (-) True G138817
TU187864 lncRNA downstream 54323 4050167 ~ 4051231 (-) True G138815
TU187834 lncRNA downstream 163080 3940636 ~ 3942474 (-) True G138794
TU187739 lncRNA downstream 263774 3841399 ~ 3841780 (-) True G138716
TU187728 lncRNA downstream 274262 3830667 ~ 3831292 (-) True G138706
TU187898 lncRNA upstream 19475 4141468 ~ 4151135 (-) True G138830
TU187902 lncRNA upstream 40219 4162212 ~ 4162480 (-) True G138834
TU187888 lncRNA upstream 50986 4172979 ~ 4175596 (-) True G138822
TU187924 lncRNA upstream 57831 4179824 ~ 4234182 (-) True G138837
TU188046 lncRNA upstream 210401 4332394 ~ 4351126 (-) True G138910
XM_007250682.3 mRNA downstream 31276 4068778 ~ 4074278 (-) True eif4a2
XM_015606174.2 mRNA downstream 89415 4002825 ~ 4016139 (-) True LOC103021848
XM_022677695.1 mRNA downstream 115291 3974810 ~ 3990263 (-) True LOC103032259
XM_022677842.1 mRNA downstream 244198 3847722 ~ 3861356 (-) True LOC103047802
XM_007250677.3 mRNA downstream 308760 3793328 ~ 3796794 (-) True LOC103031615
XM_022677851.1 mRNA upstream 6539 4128532 ~ 4142618 (-) True ripk2
XM_022677852.1 mRNA upstream 6539 4128532 ~ 4142618 (-) False ripk2
XM_022677696.1 mRNA upstream 59196 4181189 ~ 4225637 (-) True LOC103023384
XM_022677698.1 mRNA upstream 114676 4236669 ~ 4269902 (-) True LOC103024655
XM_022677857.1 mRNA upstream 121473 4243466 ~ 4245836 (-) True LOC103024348
TU187750 other downstream 253872 3848000 ~ 3851682 (-) False LOC103047802
TU187730 other downstream 271884 3832721 ~ 3833670 (-) True G138708
XR_002651005.1 other downstream 1042795 3050400 ~ 3062759 (-) True LOC103045355
TU187245 other downstream 1618803 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 3004061 1050532 ~ 1101493 (-) True G138199
TU188022 other upstream 209657 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 211140 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other upstream 213998 4335991 ~ 4338094 (-) False LOC103034146
TU188266 other upstream 1154113 5276106 ~ 5276468 (-) True G139074
TU188315 other upstream 1208085 5330078 ~ 5330805 (-) True G139105

Expression Profile