RNA id: TU384778


Basic Information

Item Value
RNA id TU384778
length 581
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G280313
representative False

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 102563 ~ 138201 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACAGGTGTTCACTGTGTTGAACTGAGCCAGTCTGGATCTACAGTTGTAGCACCTGGTCAATCAACTACACTGACCTGTAGAGTTTCTGGATATTCACTGAGTGATAGCAGCTACTGTTCACACTAGATACGACAGCCTGCAGGAAAAGCTCTGGAGTGGATTGGATGTGTATGTGGTGGTGGTGACACTTACTACAGTGATAAaggtGTTCACTGTGTTGAACTGAGCCAGTCTGGATCTACAGTTGTAGCACCTGGTCAATCAACTACACTGACCTGTAGAGTTTCTGGATATTCACTGACTGACGGCAGCTACTGTACAAGCTGGATACGACAGCCTGCAGGAAAAGCTCTGGAGAGGGTTGCAAGCATATGTAGTGCTGGTGACACTTACTATAGTGATAAACTAAAAAGCAGGTTTGAAATATCCAGAGACACGTCCAGCAGCACAGTGTCTTTAAGAGGACAGAATCTGCAGACTGAAGATACAGCTGTGTATTACTGCGCTCGACTCTCACAGTGAAACACATCAACAGGAACCCTGTACAAAAACCTCCTGTTGTAGAAAcactgagacacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384740 lncRNA upstream 90082 38119 ~ 39668 (+) True G280298
TU384738 lncRNA upstream 92094 36371 ~ 37656 (+) True G280297
TU384731 lncRNA upstream 98217 22417 ~ 31533 (+) True G280290
TU384807 lncRNA downstream 42852 177579 ~ 177994 (+) False LOC111190164
TU384824 lncRNA downstream 57011 191738 ~ 247699 (+) True G280332
TU384826 lncRNA downstream 72847 207574 ~ 207855 (+) True G280334
TU384837 lncRNA downstream 105627 240354 ~ 249052 (+) True G280338
TU384845 lncRNA downstream 117936 252663 ~ 254221 (+) True G280345
XM_022663913.1 mRNA downstream 99085 233812 ~ 236578 (+) True LOC111190154
XM_007242509.3 mRNA downstream 105621 240348 ~ 244545 (+) True LOC103040202
XM_022663914.1 mRNA downstream 111853 246580 ~ 258409 (+) True LOC111190155
XM_022663915.1 mRNA downstream 151332 286059 ~ 287629 (+) True LOC111190159
LOC111190130 other upstream 2180 127045 ~ 127570 (+) True LOC111190130
LOC111190143 other upstream 14145 109527 ~ 115605 (+) True LOC111190143
TU384769 other upstream 14218 102735 ~ 115532 (+) True G280313
LOC111190139 other upstream 22735 106306 ~ 107015 (+) True LOC111190139
TU384781 other upstream 22967 102563 ~ 106783 (+) False G280313
LOC111190148 other downstream 2823 137550 ~ 139641 (+) True LOC111190148
LOC111190136 other downstream 10680 145407 ~ 146074 (+) True LOC111190136
TU384803 other downstream 14930 149657 ~ 150299 (+) True LOC111190149
LOC111190149 other downstream 14982 149709 ~ 150307 (+) False LOC111190149
LOC103032846 other downstream 24573 159300 ~ 160007 (+) False LOC103032846

Expression Profile