RNA id: TU104309


Basic Information

Item Value
RNA id TU104309
length 2603
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G77361
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1278158 ~ 1318123 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAGTTTggtttataaaattttattaatgttacatAAGTGTTACACAGGGAGTAAAACATGTCCACAAGGCTTTTGGAGACTACAATTGAGGATTAGCAAAACAGAATAAGTGGTCCAAATCTATTCCAAACACTCACTGGACAACAACGCACCCTCACACGTGCACAAATCTGCAATGAAAAGTTCTAAACTGGACCCTGATCTTGGCACGTGTGCCAATTCCCATTCCATCTTGTACTTAATAAACAAAGACATGCATGGATCGATACCCAATTCAGCTTCCATCGTTTATTTAGCTCTAATTCTCTTAAGTGCCGAACTGCCGTTCCACTCCCGTTCCGATTCATGCTTTAGGTGAAATGCGCATCATCATAACCACAGTGGGATGTGAGCTTTGAGCTTTTAAAGCAGCCATCAAAagcaacaaacaaaaataaaggaaaataaaggaaaaggaaaaatcaCCAAACAGTGAGACGTCAGTTGATTTGGCCATGTTCAGTAGTGAAACGCTGCAGAGATATACTAATATAGGTCACATATGTCACAGGTCACACATGCTCACGTACACTAAATAAGCAAGTTCAAACTAGGAAAGAGGGTTCTAATCTAAATGTTGTGCGGAATTATGCCCTGCTGAATACATACACCCAAATACCCATACTCCCATACACGCATACACCGAGGGCTCGGGTGCCGCCAGTTTGTGATAAACTAATCAGGAGTGTCATTGGTAACAACAGTGTCACTACAAACAACTGTTCTACAGATCCTCAACACTCCTACTACTTTAACAAAGTCCTAAACCTCACTCCAATTCACAACATAACAACCAAATCTGTGCTTCCAAATCCTCTCCGTGGAAAATCCACAAGCGAAAGCGACCACACAAGTGTTAACGGCATTATGGAAAGAAAGAACGCGGAGTAAATATTTTACCAAAAACACTAAGCAAACGCATCATATGATGGCATccacaaactacacacacatcGCTCTCCTAAAGTAAAAATCGCACTGGATTAAATTGGTATCTTCAGTTTTCTTTACGTGGCAGTCTTGtgagttcttttttatttttttatcattagaaGTAAGAAGTGAGAATCATCATGGATTTATTTCAGTGGCATTACCCATAGCACATAACTGACTTGAGCAGTTGACAaccatgatatatatatatatatatatatatatatatatatatacggtgATATATAAGAACAATATACGCGTGTGAGAGAACCGTTATCTAAAGTTTTAAATATCCCTGCAACAAGTCTTAAACATACCAactgagaagagaaaaaaaaacacaaatctaaTGAAATGCATGTCTTTAGTCTTTAATCtttgttgtcttttttatttaactcattttttttaagacgCTGGTATAAAACAAAGCTAGTCATACTTTTCTACAGCAGAGACGGCACGCAACAGAAGACCAGGACAAACACAAACCAAGGAATGGAAGGTCTCTCGCCccaattaatcattaatatctctctctctcctcatccaAAAGCTGCACTGTGAAAAGACTCAatgattggattttttttgtgtgtgtgtgtgtgtgttttcataaaCAGCTCtcgaatgacaatattttttcctttactagAAGAATTAAGGTAGAGTAATAAGGAATGGAGATGTGTAAAAAGGTTTTCTTTTCCTCCTCATCAGTTTTCCtccttagttttctcctccGTCGCCGCCCTCTCCCTCATCCGCTGCGTTGTCCGATGTCCATAATGTGAGATTGTCTCTTAGCAGCTGCATGATGAGGGTGCTGTCTTTGTAAGACTCTTCGTTCAGTGTATCGAGCTCAGCAATGGCTTCATCAAACGCCTGCTTAGCAAGGGAGCAGGCCTTCTCTGGAGAGTTCAGGATCTCGTAGAAGAAGACGGAGAAGTTCAGGGCCAGCCCCAGGCGAATGGGGTGTGTTGGCTGCATCTCTGTCTTGCTGATATCGAACGCCTTTTGGTATGCATCCTGAGAATTCTCTATGGTGGctttcttatCGTCTCCAGAGGCGACTTCAGCAAGGTATCTGTAGTAGTCTCCCTTCATCTTCAGGTAGAAAACCTTGCTTTCAGGATTTGTGGAATTTTCAATTAAATATTTGTTCAACAgctcCAGAACATCGTTGCAGATTTCTTTGAGTTCAGACTCCACTTTCTCCCGGTACTCTTTCACCATCTGAAGCTTCTTGTCGTTCCCCTCGGTCTTCTGCTCAATGCTGGATATAACCCTCCAGGCTGATCTCCGGGCACCCACCACGTTCTTGTAGGCGACGGACAGCAGGTTCCTCTCCTCGTTCGACAGCTCGGTTCCAGCCTCGGTGACCTCCTTCATGGAAGCTGCCATGTCATCATAGCGCTCAGCTTGCTCTGCCAACTTGGCCTTCTGAATAAGCTCTGTTCTATCCATTCTGTTCTAGATTTCTTAATTTATGTTTGCTTGTCGCAACAAAAGTCTATGGGCCACGAAAGCCTTCCAAGCGATTGGAGAAGATAAGAGATTTGATAGCTGGCTAATCAAATGAGTGGAGTGAACCAGGTTCCTCCTAGGTCTTCAGGGAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104292 lncRNA downstream 73064 1231285 ~ 1233417 (-) True G77344
TU104304 lncRNA downstream 94758 1211368 ~ 1211723 (-) True G77356
TU104303 lncRNA downstream 98098 1207910 ~ 1208383 (-) True G77355
XR_002650293.1 lncRNA downstream 120174 1173460 ~ 1186307 (-) True LOC111193165
TU104273 lncRNA downstream 130366 1112475 ~ 1176115 (-) True G77331
TU104400 lncRNA upstream 25933 1344056 ~ 1345290 (-) True G77421
TU104401 lncRNA upstream 27231 1345354 ~ 1346516 (-) True G77422
TU104404 lncRNA upstream 120342 1438465 ~ 1440984 (-) True gpx2
TU104420 lncRNA upstream 198821 1516944 ~ 1519955 (-) True LOC103036887
TU104421 lncRNA upstream 199575 1517698 ~ 1519955 (-) False LOC103036887
XM_022672561.1 mRNA downstream 41067 1234345 ~ 1265414 (-) True grhl1
XM_022672562.1 mRNA downstream 41068 1234345 ~ 1265413 (-) False grhl1
XM_007255091.3 mRNA downstream 87836 1213559 ~ 1218645 (-) True LOC103038386
XM_022672555.1 mRNA downstream 477466 821625 ~ 829015 (-) True abraxas2
XM_015607303.2 mRNA downstream 552368 750827 ~ 754113 (-) True LOC107197769
XM_022672565.1 mRNA upstream 11215 1329338 ~ 1343052 (-) True LOC103043117
XM_015606975.2 mRNA upstream 30825 1348948 ~ 1365774 (-) False LOC103039408
XM_007230373.3 mRNA upstream 30825 1348948 ~ 1365774 (-) True LOC103039408
XM_022672566.1 mRNA upstream 52204 1370327 ~ 1431244 (-) False LOC103042803
XM_022672567.1 mRNA upstream 120958 1439081 ~ 1441301 (-) False gpx2
TU104314 other downstream 32311 1273737 ~ 1274170 (-) True G77362
TU103992 other downstream 770434 465300 ~ 536047 (-) False ivd
TU103983 other downstream 923196 382156 ~ 383285 (-) True G77111
TU103946 other downstream 1153208 146345 ~ 153273 (-) False gdf7
TU103769 other downstream 1230375 64836 ~ 76106 (-) True G76963
XR_002650296.1 other upstream 49974 1368097 ~ 1431244 (-) True LOC103042803
TU104667 other upstream 399385 1717508 ~ 1764531 (-) False LOC103034803
TU104677 other upstream 535521 1853644 ~ 1860381 (-) False srp14
TU104678 other upstream 535521 1853644 ~ 1860381 (-) True srp14
TU104704 other upstream 724875 2042998 ~ 2047241 (-) True LOC111193168

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000062_04070271_04080873.mRNA True 868 mRNA 0.49 6 CI01000062 4070271 ~ 4080973 (-)
eurasian perch (Perca fluviatilis) TU1677 False 574 lncRNA 0.41 2 NC_053112.1 3661852 ~ 3677073 (+)
bowfin (Amia calva) TU1677 False 2743 lncRNA 0.45 4 CM030121.1 9009297 ~ 9020218 (+)