RNA id: TU105040


Basic Information

Item Value
RNA id TU105040
length 1782
RNA type TUCP
GC content 0.36
exon number 2
gene id G77892
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3297582 ~ 3348989 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtttgatggcttgtgatcatccatcttcctcttgattatattcaaaagATTTTCAATCATAGAAACTTCTCAttgttaagtggtctcttattttttccccagagctgtacatgttcTATATATCAAGCTATGGaaacagtggcttgcaaaagtattcatgccCATTAaactttcacattttgtcaccttacaaccacaaacttaaatatatatttttgtatttattttaactaatagaccaacacaaattaGCACATCAGTGAGAAGtgatttaatcaaataaaaatctgaaaagtgtgatgtgccaACTTATTCAGCACCCCTTTATTCCGAAACCCATAAATAAAATCGAGTTCAATCAATTTCCCTTCAGAAAACAATTAATTCTTTAATagaatccagctgtgtgtaatttatttttagtgtgttGCGAACTAgcgaacaaacagcatcatgaagagaccaaggaactcaccagacaggtcagagataaagttgtggagaagaattttaaagcattaggttatgaaaaacatatcccaagctttgagcatcccaagtagcattgttcaatccatcatccaaagaTGGAAAAAGTAATCTATACCTGCAAACCTACTAAGACATGGTTCACccaactgacagatcgagcaaggagagcactggtcagagaagcagccaagaggcccatggtcactctggaggagctgcagaaattcaCAGCTCATGTGGAAGAATCAGTCCACAGGGCAACTATAATTCATACACTTTATGGAAAAGTGGGAAGTAGCAAGAAcaaaaccattgttgaaagaaagacacaagaagtgctgtttgtagTATGCTACAGGCAAACTGTACAGAATACAGCaaatgtggaagaaggtgcttcTTTGCGTTGGTCCATCACTTATTACTTCACAATAACActtgataaaatacatttaaatttgtggttgtaatgtgataAATTGTGAAAAGGCTCAACAGGTATTAATACTATATAAATGTATACCGACAAATCAAAGTTGGTACAAATAACCAGACACCCCAGCAATTTGTTCCTGTATTAATAGAGCTTTCATTTTAGCTTATTCCAAAGTTGATGCTGTTTCTCGTTTTGCTTCTGTATCACAGCAAATGCTGTATTTAGCTGATTGGTGTTATAGTTTGTCCTATATGCTGTTTTAGTTTGTAGTAAACCTATCGAGCTAGGCGGTTAATCGAGCACCATGATAACGTCTCCGGTTGCTCTGCAGGCTGTAGACCTTCAATACGCTGAAATCAGAATGCCGATTTCCAGGACCTGAACAAGGCCTCATGTGCTGTAACTGTTTCTCCTAAGCATGTTCTCTAATAGCTGCTGATATATTGTTACTGAttttgtaatgattaataataaaatcgaCTCTATTATCACAAGTTAAGACTTGGATCCTACTCATGAATTTCTCAATATCTAAATTTTCTATTATCGTACAAACTCCAGTACATAACGCTACCTTAGTGAAcatggggtaaaaaaaaaaaaaaaaaagagaccatgcTCTCTATCTGACACAAGTGCAGATATGTGCCAAAGACTACCATGATTTCACTCACGTCAAGTATTTAACTTGTATTAGTGTTATTAGGGACTTCCCTTACTTTCCCTATAGGTCAGACTTCAGTCTGTATCCCTTTAATAAAAGCCCTGAAAATACCCTCTAATATAAACCAGTACCCATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105038 lncRNA downstream 254 3296348 ~ 3297328 (-) True G77891
TU105035 lncRNA downstream 12905 3270756 ~ 3284677 (-) True G77888
TU104925 lncRNA downstream 84429 3212929 ~ 3213153 (-) True G77801
TU104901 lncRNA downstream 190997 3106385 ~ 3106585 (-) True G77779
TU104899 lncRNA downstream 205954 3000586 ~ 3091628 (-) True G77777
TU105054 lncRNA upstream 7541 3356530 ~ 3359703 (-) True G77902
TU105070 lncRNA upstream 45360 3394349 ~ 3394904 (-) True G77912
TU105078 lncRNA upstream 81176 3430165 ~ 3431406 (-) True G77919
TU105102 lncRNA upstream 165707 3514696 ~ 3515280 (-) True G77941
XR_002650299.1 lncRNA upstream 223034 3572023 ~ 3620248 (-) True LOC111193169
XM_022672601.1 mRNA downstream 90896 3175798 ~ 3206686 (-) True bmf
XM_007257920.3 mRNA downstream 90901 3175798 ~ 3206681 (-) False bmf
XM_022672599.1 mRNA downstream 252819 2966898 ~ 3044763 (-) False LOC103029757
XM_022672598.1 mRNA downstream 252819 2966898 ~ 3044763 (-) False LOC103029757
XM_022672597.1 mRNA downstream 252819 2966898 ~ 3044763 (-) True LOC103029757
XM_022672608.1 mRNA upstream 296108 3645097 ~ 3714357 (-) True prkd1
XM_022672609.1 mRNA upstream 296108 3645097 ~ 3714016 (-) False prkd1
XM_022672614.1 mRNA upstream 532330 3881319 ~ 3909337 (-) False strn3
XM_022672612.1 mRNA upstream 532330 3881319 ~ 3909335 (-) True strn3
XM_007257905.3 mRNA upstream 568667 3917656 ~ 3952193 (-) False hectd1
TU104917 other downstream 91366 3197129 ~ 3206216 (-) False bmf
TU104742 other downstream 1106929 2190313 ~ 2190653 (-) True G77656
TU104721 other downstream 1142242 2150788 ~ 2155340 (-) True gchfr
TU104716 other downstream 1142242 2151155 ~ 2155340 (-) False gchfr
TU104718 other downstream 1142242 2151438 ~ 2155340 (-) False gchfr
XR_002650301.1 other upstream 284105 3633094 ~ 3638915 (-) True LOC111193170
TU105108 other upstream 342618 3691607 ~ 3714277 (-) False prkd1
TU105210 other upstream 485573 3834562 ~ 3840570 (-) True G78023
TU105293 other upstream 696445 4045434 ~ 4206384 (-) True G78083
TU105554 other upstream 1835803 5184792 ~ 5186358 (-) True G78297

Expression Profile