RNA id: XM_022672608.1


Basic Information

Item Value
RNA id XM_022672608.1
length 4022
RNA type mRNA
GC content 0.50
exon number 19
gene id prkd1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3645097 ~ 3714357 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATCTCAGCGTTAGGCACCTCGCTCTGATAACCGGAACAGGCAGGAGGCGGTGTCTATCAGAGCCCAACATTAAACATATCTGACGTCTATGGCTCCATCAGCATCCCTTCTCAATGACCAAAAAAGCGCTTTGCGTTTCACAGCTTCTAAATGCGGTCAGGTTTATTAGCTATAATATATTTCCCCGCGTCGTTTTACCTCTAGGACAGACACTgtgctgtgtgtttctgttttttttgggggggcgaGTCGaagtttgtatttattattttcctccGAGAAGCGGAGCGCGTTTGACCGAGACTGAGAGCAGACTGACCAGCCGCTGTCCAGCCGTGACCGCTCGGGGATTCTCATGAGTGTCCCTCCGGTGATCCGGGCGCCCAGCCCCGTCCCGGGCTCCCAGGGCGTTTCCTTCCACATCCAGATCGGGCTGAGCCGGGAGCCGGTGCTGCTGGACTCGGGGGACTTCAGTCTAGCGCAGGTCCGAGAAATGGCGTGCTCCATCGTGGACCAGAAGTTTCCAGAGTGTGGCTTCTATGGGATGTATGACAAGATCCTGCTTTTCCGTCACGATCCGACGTCCGACAACATCCTGCAGCTGGTGAAATGTGCTTCAGACATCATGGAAGGAGATCTGGTGGAGGTCGTGCTCTCTGCTTCTGCGACAGTGGAGGACTTTCAGATCAGACCTCACTCCCTGTTTGTCCACTCGTACCGCGCCCCTGCTTTCTGTGACCACTGTGGAGAGATGCTGTGGGGTCTGGTGAGGCAGGGACTCAAGTGTGAAGGCTGTGGGCTGAACTACCATAAACGGTGTGCCTTTAAGATCCCAAACAACTGCAGTGGTGTTCGGAAACGCAGGCTGTCTAATGTGTCCCTCACTGGCCTGACCCACACCCGCTCTGTGTCTGCTGAACCTTCACCCAGCACCTCTGATGAGGCCTTACTGTCTCCTGTCAGTCCAAGCATGGATAAGAGCCAGGCGGACGTATTCCCTGGAAGAGGACGTTCCAACTCGCAATCCTACATCGGGCGTCCCATCGAGCTCGACAAGATCCTGCTGTCTAAAGTCAAGGTGCCGCACACATTCGTCATCCACTCCTACACACGCCCCACTGTCTGCCAACACTGCAAGAAGCTCCTCAAGGGCCTGTTCCGCCAGGGCCTGCAGTGCAAAGATTGCAAATTCAACTGCCACAAACGATGTGCACCCAAAGTGCCAAACAACTGCCTTGGCGAGGTGTCGAGAAACGGAGATCTTTTGAGTCCTGGTGCTGAGTCAGACATAGTGATGGAGGAAGGCTGTGATGATCATGATGGAGAGAGGAACAGTCCCCTCATAGATGAGATGGAGGAGTCACTAGTGTCTGATCATGCAGGACTGCTGGATGCAGGACATGGTGAACTGGTGGACTTTCATGATCCAGATCCTGATGAGTCCAACAGAATCATCAGCCCATGCACCAGCAACAACATCCCCCTCATGCGAGTGGTCCAGTCAGTCAAGCACACCaagagaaaaagcagcaacGTCATGAAGGAGGGCTGGCTGGTGCACTTCACCAGCAAGGACACACTGCGCAAGAGACATTATTGGCGACTGGACAGCAAGTGCATTACTTTGTTTCAGAATGATACTGGAAGCAAATACTATAAGGAAATTCCCCTAtctgaaattctttctttggaGCCGGCTAAGACCTTCAATCTGCTCCCTGAAGGTGCTAACCCACACTGCTTTGAGATAGCTACGACCTCGCTGGTGTACTACGTAGGAGAGAACCTGTCTCGACTGGACGACTGCTCATCAGGCCACGGCAGCAGCATGCTGGTCAGCGGAACAGGACAAGACGTGGCCAGCATGTGGGAGATGGCCATCCAGCATGCCCTCATGCCAGTCATTTCAAAGGGCATGGCGCACAGCGGCCGACACAGCCATCACAAGGACGTCTCCATCAGCATCTCCGTATCCAACTGCCAGATTCAGGAGAATGTGGATATCAGCTCAGTGTACCAGATATTCCCGGATGAAGTTCTTGGATCTGGACAATTTGGCATCGTCTACGGGGgtaagcacagaaaaacaggtcgAGATGTAGCAATCAAGATTATAGACAAGCTACGCTTCCCCACCAAACAGGAGAGCCAGCTGCGCAACGAGGTCGCAATCCTTCAGAACCTTCACCACCCCGGGGTCGTGAACCTGGAGTGCATGTTCGAGACTCCGGAGCGCGTGTTTGTTGTCATGGAGAAGCTCCATGGCGACATGCTGGAGATGATACTGTCTAGTGAGAAGGGGAGGCTGCCAGAGCGCATCACCAAGTTCCTCGTCACGCAGatCCTTGTTGCACTTCGCCATCTTCACTTCAAAAACATCGTGCACTGTGACCTCAAACCTGAGAACGTCTTGCTCGCGTCGGCCGACTCCTTCCCTCAAGTGAAGCTGTGCGATTTTGGCTTCGCCCGGATCATCGGGGAGAAATCGTTCAGGCGCTCGGTGGTGGGCACCCCCGCCTACCTGGCCCCCGAGGTGCTGCGAAACAAGGGCTACAACCGCTCCCTGGACATGTGGTCCGTGGGAGTCATCATCTACGTCAGCCTCAGCGGGACCTTCCCCTTCAACGAGGACGAGGACATCCACGACCAGATCCAGAACGCTGCCTTTATGTACCCGCCCAACCCGTGGAAGAAGGTGACCCCAGAAGCAATTGACCTCATTAATAACCTGctgcaagtcaaaatgaggaAGCGCTACAGCGTGGACAAGTCCCTCAGCCATCCCTGGCTACAGgacttCCAGATGTGGCTGGACCTGCGTAATCTGGAGTGTAAGATGCAGGAGCGATACATCACTCACGAAAGTGACGACATGCGCTGGGAGCATTTCGCCGAGCAGAACGGCCTGCAGTACCCCGCCCACCTCGTCAACCCTCACGCCGACGTCAGCgaggaggcggagtctgacgAGGCCATCCTGTGCACGCTCAGCGATCGAGTCAGTGTGCTGTAAATTGCTGCCTGTCCCTTTAAGAAGCACAACACCAGGAAAGCCAACTATCTGCACGCTCCCAAAGCAGCACTTGAGTCAAAATATGAAGCCAGGACTACACATAATCGTAtgtacacacaattacacacaattTACACTGCCATTATaaacagcactgctttactgaaCTTACTGAACACTCGGTGCCTAAAGAGCATAACCTAACTAAACATCGCCATTCACAACCATTTCAGTGCATCCCATTTCCTCAAACCCACGATTTTGTTCACACTGAACAAGAcatactgaacaaaaaaaaaaaagcacattacaCTCAGATACTACTTACTAACTAAGagttttaatatatgtatattcagggaacaaaagaagagaaattttgtgttgtatgtgtatttttacattgactctAAATACATTGGCTCTACACAGTATACAGTGatacagtagcagcagcagtattattattgttattattattttactcgtAGGATTTTACGACAGATTTGTGCAACATAAAAGACAAAAGCCAATTAAACTGAACCTGCGGTTCAAATTAGTCAGAGATCAGCACAGTGCTGTGGATGATCTGTGAACGATGCCTTAGAGTAGAGGGAGCAGTTATAACGGATGTGTAGAAAAGAAGAAGGTCCTTGCAGCTTTTGTGGCATTGTGTGATTCCAAGGTTCATATGAGgacatttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgttttggggaggtaGGGGGTTCTGTGCAAATCAACCAGCCTGAAAACTAACACTGCCTgcagagatgttttttttttttgctttctgttGCTTTCTTCAGAATCAGttggaataaaataataaaataaaataaaaaaaatcaaagacaaTCAGTTTCTGCTTATATCATGAGCTGGTCATAGATTTCCAATGTGTTTCTTCTCTGTTATTTTCAA

Function

GO:

id name namespace
GO:1901490 regulation of lymphangiogenesis biological_process
GO:0045765 regulation of angiogenesis biological_process

KEGG:

id description
K06070 PKD; protein kinase D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650299.1 lncRNA downstream 24849 3572023 ~ 3620248 (-) True LOC111193169
XR_002650298.1 lncRNA downstream 26643 3572023 ~ 3618454 (-) False LOC111193169
XR_002650300.1 lncRNA downstream 26643 3572023 ~ 3618454 (-) False LOC111193169
TU105102 lncRNA downstream 129817 3514696 ~ 3515280 (-) True G77941
TU105078 lncRNA downstream 213691 3430165 ~ 3431406 (-) True G77919
TU105203 lncRNA upstream 99578 3813935 ~ 3814733 (-) True G78019
TU105207 lncRNA upstream 109088 3823445 ~ 3825615 (-) True G78022
XR_002650302.1 lncRNA upstream 156204 3870561 ~ 3872428 (-) True LOC111193171
TU105229 lncRNA upstream 162398 3876755 ~ 3879254 (-) True G78039
TU105243 lncRNA upstream 208958 3923315 ~ 3993581 (-) True G78044
XM_007257936.3 mRNA downstream 341530 3302159 ~ 3303567 (-) True ankrd9
XM_022672601.1 mRNA downstream 438411 3175798 ~ 3206686 (-) True bmf
XM_007257920.3 mRNA downstream 438416 3175798 ~ 3206681 (-) False bmf
XM_022672599.1 mRNA downstream 600334 2966898 ~ 3044763 (-) False LOC103029757
XM_022672598.1 mRNA downstream 600334 2966898 ~ 3044763 (-) False LOC103029757
XM_022672614.1 mRNA upstream 166962 3881319 ~ 3909337 (-) False strn3
XM_022672612.1 mRNA upstream 166962 3881319 ~ 3909335 (-) True strn3
XM_007257905.3 mRNA upstream 203299 3917656 ~ 3952193 (-) False hectd1
XM_007257910.3 mRNA upstream 203299 3917656 ~ 3952193 (-) False hectd1
XM_007257904.3 mRNA upstream 203299 3917656 ~ 3952193 (-) False hectd1
XR_002650301.1 other downstream 6182 3633094 ~ 3638915 (-) True LOC111193170
TU105040 other downstream 296108 3297582 ~ 3348989 (-) True G77892
TU104917 other downstream 438881 3197129 ~ 3206216 (-) False bmf
TU104742 other downstream 1454444 2190313 ~ 2190653 (-) True G77656
TU104721 other downstream 1489757 2150788 ~ 2155340 (-) True gchfr
TU105210 other upstream 120205 3834562 ~ 3840570 (-) True G78023
TU105293 other upstream 331077 4045434 ~ 4206384 (-) True G78083
TU105554 other upstream 1470435 5184792 ~ 5186358 (-) True G78297
TU105931 other upstream 3484992 7199349 ~ 7220854 (-) False LOC111193177
XR_002650306.1 other upstream 3562043 7276400 ~ 7277784 (-) True LOC111193180

Expression Profile