RNA id: TU112773


Basic Information

Item Value
RNA id TU112773
length 1799
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G83704
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26463849 ~ 26484628 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACctcattttacagtataaaacaatttatttgcaggaaTGCAAAAAACGTTGTTGGCCACCAACAATAGTTTAAAATTGCTAACATCTTGTCAAAAGGTTGTAATGATACAGCTTCATCGAGAGGGAGTTAACTGCGTACAAAACCGGTTCAGTTGAATGGTTCAGTCAGCTGTTTGCTATATATGGAATATAAACCAAATCTGCAGCATCCCTTTTTCCACTGAATGATCCTGTCCCTTCCCAGTGAGCACAGCCACAGGCCCATTCACAGAGGCTGCACAGTCagcctactttttttttctgcctctgcTGACACGTGGCCGGCTCAGAGCTGAAACATGATCATTCAAGTTTATgattcatgattaaaacaaacctttaaaacaacaaaaaaaagtttacggTGGTACAGGACATGATTCTGTGGTCTTTACAGAGCAAGCTTCCAAAACTGCTTTCTCCACGTAAAGAAAAAAGGGACACTGCAGGGCTTAGCAAAAGCAGTTGATGCCTTTGTGATGTTCAAGCCTTTACAAAAGTAACATTTTATTCCAAAACTATCATACAATCATACAACCAGTAACTACATAATCTGAAGAAGCAAGGCAgctaattcagttcaaaataagataaaagcAGGGCTTGTTTAGGCTCATCATATGAGATTATTTTGCATGCCCAGTTTGACTGTTCGCAGTGTCAGAGCAGCAGCAAAATGACTATTAcattaagtacattttttgAGCAGCTGCTCTAATGcatatttcataaaaaacaaGCCCTGCTTTCATCAATATAAGTTTCCCTATTTACAGTACAGGCAGGGTAGTTCAATCCTCTGTACTGAGGTAGTTAACCAACCCTTTAAAGACAAGTTCTTAAAAAGAACCACTTTCCTGGAATGCCTGACTTATCCATGCAAGGCGGTTACACCAAAAACCTGCAGATGCCATGTCCTCTTCATCCAAATCAAAAATTTAGATAACATGGATATTCTGacaataaaattacaattagcacaaaaatatacattagcATCAAGCTCATTTGAGCCACTTCaaactcaaacttaaaaaaaaagtgcaaaaaaaaaaaaaaaattttagtaTCCTTTAGGAAGTCTGAACGTCACAAATGATTTGAACTGGTGCATTTTGTATTTTGGGGAACATTACAATGAGTAGCATGACATTTTGAATGCaagactttttttaatgaatacagAAAGTCCAACGTACAGAATTTCCATTGTGGTGAGGGGGGTTCGGGGTGGCAGTAGGGGAGATATGCTTCTGTAAGGCTGGAAAATCATTGGACCATTGCCTTGACCTTACCATCATATCCATTGGCAGCTTATGGTGTAACCCCGTGTAGCAAGTCAGTCTTCACTGTAACTGGTCAGGACCAGCCTCGACCCCCTTTCCCTgCACACGGCCTCTCTGCTGAGTTCCTCCTCTGGACCCACGTGCACCTCTGCTGGATCCTGGGGCTCCGCGCTGGGAGAAACTGGCTCGTCCTCTGGCAGTGGCTGCTCCACGTCCCCTGGAAAGTGCAGAACCACGGTTTCCACGACCACCTCTTCCTCTGGCTTGAAAGTCTTCATATCCATAGTATGGATCTTCATAGCCTCCTCTGTAGTTGTGATAGTCGTAGCCGTAGTAATCATAGTAATTCTCGTAGCCGTAGTAGTCGTGGGGATATGAAAAGCCTCCCctgcctcctcttcctcttgctCTTgccggaggaggcatgtgtggTGGGCcatagtaataataatcatcatacCTGGGGAAGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112763 lncRNA downstream 87989 26392868 ~ 26394102 (-) True G83694
TU112706 lncRNA downstream 154806 26326039 ~ 26327285 (-) True G83652
TU112693 lncRNA downstream 203578 26278100 ~ 26278513 (-) True G83643
TU112684 lncRNA downstream 276706 26204986 ~ 26205385 (-) True G83635
TU112665 lncRNA downstream 451851 26007715 ~ 26030240 (-) True G83616
TU112961 lncRNA upstream 233731 26718359 ~ 26719413 (-) True G83844
TU112976 lncRNA upstream 240150 26724778 ~ 26725100 (-) True G83859
TU112977 lncRNA upstream 240492 26725120 ~ 26725337 (-) True G83860
TU112957 lncRNA upstream 243351 26727979 ~ 26747709 (-) True G83842
TU112983 lncRNA upstream 284001 26768629 ~ 26777450 (-) False G83863
XM_007257424.2 mRNA downstream 11963 26468159 ~ 26470128 (-) False cga
XM_007257425.2 mRNA downstream 16797 26452246 ~ 26465294 (-) True LOC103028387
XM_007257429.3 mRNA downstream 33152 26435232 ~ 26448939 (-) True orc3
XM_007257432.3 mRNA downstream 92833 26370043 ~ 26389258 (-) False kcnk10
XM_007257431.3 mRNA downstream 93534 26370043 ~ 26388557 (-) True kcnk10
XM_022673060.1 mRNA upstream 23641 26508269 ~ 26533299 (-) False LOC103024701
XM_007257409.3 mRNA upstream 24704 26509332 ~ 26534395 (-) True LOC103024701
XM_007257398.3 mRNA upstream 575896 27060524 ~ 27063834 (-) True gjd2
XM_022673071.1 mRNA upstream 594713 27079341 ~ 27139504 (-) False aqr
XM_022673072.1 mRNA upstream 594713 27079341 ~ 27139504 (-) True aqr
TU112771 other downstream 11928 26434472 ~ 26470163 (-) True cga
TU112655 other downstream 478406 25992499 ~ 26003685 (-) True G83612
TU112362 other downstream 1441073 25037235 ~ 25041018 (-) False LOC103040243
XR_002650359.1 other downstream 1846210 24630879 ~ 24635881 (-) False LOC103026430
TU111816 other downstream 2464435 24012634 ~ 24017656 (-) True G82991
TU113207 other upstream 1350154 27834782 ~ 27838795 (-) False LOC103043566
TU113436 other upstream 1859961 28344589 ~ 28356545 (-) True G84215
XR_002650375.1 other upstream 2190970 28675598 ~ 28694982 (-) False rps6kl1
TU113680 other upstream 2590848 29075476 ~ 29076115 (-) True G84392
TU113916 other upstream 3323901 29808529 ~ 29810277 (-) True G84579

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU2269 True 1617 lncRNA 0.33 2 CM030121.1 11368023 ~ 11403029 (+)