RNA id: TU2269


Basic Information

Item Value
RNA id TU2269
length 1617
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G1902
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11331039 ~ 11403029 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttgttcatcCTGGCTGCAGTTACGTTTCAGTCACTTacctgtatattttaaagactGAATATGATGTCAGATGCTTATTTTTCCACATGAGTGGTGTTCTTTTCAAGACTTCTCAATTTTAATAGATTTGTAAGACTTATGTTAAAATAGACTAAATTTAAAAAGGTCTTCACAACTTTTTCCAAACCTAGAACATTTACTTCAAGGTTACTTTATAATGTGAATAATCTGAGGCACTTTTAAAACTACCTTTAGTAGACCAACATATATCAAGTTAAAACGGCCAAATAAAAACCTTGCAGAGAACAGTGAAACATTCTGAATGTAGTGTAAACTGAAAAGGCTATACACTGAGAAGACACTCAAGAAGCTAGGCTTTtgctgaaaacatacatttaaaccattgtgaaagaaaaaaacagttctAGAGATCTAGCATAGCAAACAGTTTTAAGACACAGATAAAAATCAAAaactttattacaaaaataagttaCACTCACCTCATCTTACAgtataaaacaatttatttgcAGGAATGCAAAAATGGTTGTTGGCCaccaacaatattttaaaactggtaACATCTTTTCAAAGGTTTGAAGGTGTAATGATACAGACTTACTGAGAGGGAGTTAACTGGGTACAAAACCGGATGAATAGTTCAGTCTCCTTTTTGCAATACATGGAATATAATCAAAGCTGCAGTATCCCTTTTAAACCGGATGACTACCAGCCTCCACCAATTAATGCTGCTACTGTCAAAATTGAGGAAGGTGTGAATGATGAGCTCTGTCACGTTAAAGAACATGACAAACAAGGCAGCTGGTCAGAGATCAGAATGAAGACCATTCAGGGTGTGCATGATTAGGGCTAACAATATTGTACACAAATGAACTATGATGGATCTGAACATAATTGCAGATTGAATTGGAGCAACCTTCAAAAGATGCTTTagtataataaaaaagttaagATACATTGTCTTCCACTGAAAAAGGGACACTGCAGAGCTATTCAAAAGCTGTTCTGATGCTTTTGTGATGTTTGAGCTTTTacaaaagtaacatttttttctaaactatCATACAACCAGTAACTACATAACCTGAAGAAGCAAGGCAGCTAATTCAGTTCAAATAGGATGAAAGCAAGGCTTGTTCAGACTCATCATATGAGATTATATCACATGCCCAGTTTGACTGTTCGCAGTGTCAGAGCAACAGTGAAATGACTATATTACATTAAGTACATCTGCTCTACTGTTGCTCTTGTGCATATTTTGTTTGGAACAAGCCCTCCTTTCATCAATAAAGTTTCCCTATTTACAGTACAGACAGGGTAGTTTAATCCTCTGTACTGAGGTAGTTAACCAACCCTTTAAAGACAAGTTCTGAAAAGAACCACTTTCCTGGAATGCCTGACTAACCATGCCAGGTGGTTACACCTCAACCTGCAAATGTCCTCTTCAAACCTACCCAAATCAAACAATTAAGATTAACATGGATATTCCAACATAAAGCTGCAATTAGCACAATTTATACAATAGCATCAAGCTCCTTTAGAGCcacttcaaacaaaaaaaaaaaacaaaaaaaaaaaaaaGAAAAAAGAA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2254 lncRNA upstream 139748 11227959 ~ 11228275 (+) True G1891
TU2211 lncRNA upstream 317379 11050151 ~ 11050644 (+) True G1855
TU2056 lncRNA upstream 910258 10431664 ~ 10457765 (+) True G1747
TU2011 lncRNA upstream 1129762 10236856 ~ 10238261 (+) True G1706
TU1863 lncRNA upstream 1664545 9700557 ~ 9703478 (+) True G1574
TU2326 lncRNA downstream 59309 11462338 ~ 11482931 (+) False AMCG00003604
TU2383 lncRNA downstream 167023 11570052 ~ 11570410 (+) True G1987
TU2400 lncRNA downstream 322054 11725083 ~ 11729991 (+) True AMCG00003614
TU2424 lncRNA downstream 410093 11813122 ~ 11831420 (+) True G2018
TU2434 lncRNA downstream 502954 11905983 ~ 11906188 (+) True G2027
AMCG00003599 mRNA upstream 24999 11316201 ~ 11343024 (+) True AMCG00003599
AMCG00003598 mRNA upstream 94863 11261733 ~ 11273160 (+) True AMCG00003598
AMCG00003593 mRNA upstream 235553 11107394 ~ 11132470 (+) True AMCG00003593
AMCG00003594 mRNA upstream 269063 11084163 ~ 11098960 (+) True AMCG00003594
AMCG00003591 mRNA upstream 319447 11025209 ~ 11048576 (+) True AMCG00003591
AMCG00003603 mRNA downstream 46291 11449320 ~ 11460063 (+) True AMCG00003603
AMCG00003604 mRNA downstream 58634 11461663 ~ 11482496 (+) True AMCG00003604
AMCG00003606 mRNA downstream 87210 11490239 ~ 11491597 (+) True AMCG00003606
AMCG00003607 mRNA downstream 90923 11493952 ~ 11508306 (+) True AMCG00003607
AMCG00003608 mRNA downstream 107376 11510405 ~ 11515479 (+) True AMCG00003608
TU1883 other upstream 1587121 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2104555 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 2715619 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 4873118 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 87156 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 170702 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 1634408 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 1752031 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 3015487 14418516 ~ 14419732 (+) True G2440

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU112773 True 1799 lncRNA 0.42 2 NC_035905.1 26482091 ~ 26484628 (-)