AMCG00003608


Basic Information

Item Value
gene id AMCG00003608
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11510405 ~ 11515479 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003608
CGGGGTGCGAGGCTGTGCGCTGCGGACTGACTGCGGTTTATTAAATATAGCGCTTAATGCAACACCTCGGTCCTTGTATTGGCACGTATGAAGCTCGTTGAGTCTTCGTTCAGTTTGCTGCTGCTTTTGCCAATCGTAATTGCGCCGATTTGGCTGTGAAGAGGCTGCCGGCATGTCGCGCGCTCAGGCGGAGAGCGTCATCAAAAGCATCATCCGCGAGATCGCCTGCGCCTGCGCAGAGAGGGGCCGCGCCGTGTCCGAGACGCTGGCGGCGTTCATGGTAAAAGCTGCGGTTTTAGATCCAAGAAATGAGTTCAATGTGGACCGAACTCTTACAAAACAGGATGTCCAGAAACTGATCAAGCTGTGTGTGGATAGGCTGCTGGACCAAACGAGCCCATCTCTTGACACAATCAAAATGCAGGTTTACTTTGACATGAACTACACAACCAGACGCGAGTTTGTCGACGAGCACCAGCGTGTGCTGCAGGCCCGGCTGGCCCCGGCGAGCCGCGAGATCACGGACAGTCGTGCTCGCTCCCGTGAGGAGCTGGAGGGCCTCGTATTCCCTCAGCCCGAGCTGGGCACGTTCCTCTCCCTCATCAAGAGGGATAAAGAGCAGCAGCTGGCCGAACTGACCATGATCGTCACGGGCATCCGTCTCTTCAACAAGGACAGTGGAAAGGGAGGGGAGGGCATCGAAGATCTGCCTGCAATCCTCAACGAGGCCATTCCTGCCACTAGCAAACACATCGAATCGGAGCTTGTGGCCTCCCAGGGCAAGGCCTACCAGATCACAGCCTTACTGGAGAAGCTGGGACAGAccaagggtggggggggagagctCGACGTGCAGCCGGAGCTCCTGAAACAGGCGTTATATAACCTTCGACAACATGAAACATTCCTGCATATCATTTTGGCAGATGTGATTACATGTGCAAAGCAAGTGGAAGCGCTGCAGACCCAGCTGGGAGCCCGAATGACGGAGCTGAACTCCACAGTGCGGGCCAAGACTGCGGTTCCCACGGCGCAGGTTTATCCCCATTTCACAGCTCTGTCTAAGCTGTGGTCGGGGCTTCAGGACGAGATGGTCCTCCTGACTGTTCTCCGCAACATGGTCGCCAACCTGCAGCCTTTCCTGGTGAGCCAGTCCCAGCTCCTCCCTGACAGCCACCTGGAGTCTCTGCTGGAGGGCCTGGAGGTCGAGACTGATGAGCACAGGATGGCACGGTCCTCAGGAAACCGTGTTGCCGTTTCTGAGTATAAAAACCAAGAATGGCTTTTCCCGGAGACGACCGCTAACTTCGATAAACTGCCCCTTCAGTTCCGGGGAATCTGTGGCTACACAATTGTCAAGAAGGATGGTCTTCTGTTGCCAGGTAACCCGGATATCGGAATCCTGAAGCACAGGGAGAAATTCTACATCTTCAGCTCCAACGAGGCTGCCTGCAGTTTTGCGGAGAACCCAGAGGAGTATATTTCACAAGTGGCCGAGAAAGCAAAGCAGTCTGCAGAGCTAATACAGCTTTTAGAGCTGCATCAGCAGTTCTCATCCATCACGCCCTACTCAGAGATGAAATCTGGCGAGAAGTTGTTGGTAAAAGCGATTACAAAGTGTGACAGCAGCACGCAGACGGACACGCACCTGGTGGAAACTAACATCGTGAAGTCATATGAGTGGAATGAATGGGAGCTGCGACGAAAAGCCATCAAACTGGCTAATTTGCGAAACAAAGTGACCCACTCAATGCAGACAAATCTCAGTCACATGAGAAGGGACAATATTTCCCAGGTCTACCTTCCCAAACAGGCTGCCTGTCAGACCAAGCGGGACAGCAAAAGCAACGTCCCCAAACCGCAGGTGTACCTGGCCGGCCTGCGCGGAGGACAAACCAAGAGCACACACATGATCAAGACCAACTTAACCAGAGCAGTGGATGAATAGTGTGCATGTCACACGAGTCATTTTATATTTGGAAATGCtttcaaattgtaatttttcaattttcttgtTCCATTGTCTCACTGTTTActgaatacacatttttctcTTAGTCATAATACCATTGAAGCTCCTTTTCATTTGTTCATCGTTCTCCTCGGTGACTTGCATGAAAGGATATACATGCTATTTACAACAAGCTTACTGTGTTAGTTGAACAAaggtgcaaaacaaaagcaccaaTCCTTCAAAACTTGCTGTACCCAGATGTAACCCTCACCCTAAGGGCATTCAAAGATACTGGGAAATATAAccccaaccaaaaaaaaaccgTCCTTctccttgtgttttgtttagcagTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003608 True 2308 mRNA 0.51 12 11510405 11515479

Neighbor

gene id symbol gene type direction distance location
AMCG00003607 NA coding upstream 2099 11493952 ~ 11508306 (+)
AMCG00003603 NA coding upstream 50342 11449320 ~ 11460063 (+)
AMCG00003599 NA coding upstream 167381 11316201 ~ 11343024 (+)
AMCG00003598 NA coding upstream 237245 11261733 ~ 11273160 (+)
AMCG00003593 myo6b coding upstream 377935 11107394 ~ 11132470 (+)
AMCG00003605 slc35a1,LOC106607707 coding downstream 4027 11519506 ~ 11527074 (+)
AMCG00003609 NA coding downstream 27088 11542567 ~ 11559145 (+)
AMCG00003615 NA coding downstream 217076 11732555 ~ 11742638 (+)
AMCG00003621 NA coding downstream 309306 11824785 ~ 11828430 (+)
AMCG00003620 NA coding downstream 324258 11839737 ~ 11840496 (+)
G1902 NA non-coding upstream 107376 11331039 ~ 11403029 (+)
G1891 NA non-coding upstream 282130 11227959 ~ 11228275 (+)
G1855 NA non-coding upstream 459761 11050151 ~ 11050644 (+)
G1747 ralgapa2 non-coding upstream 1052640 10431664 ~ 10457765 (+)
G1706 NA non-coding upstream 1272144 10236856 ~ 10238261 (+)
G1987 NA non-coding downstream 54573 11570052 ~ 11570410 (+)
G2018 NA non-coding downstream 297643 11813122 ~ 11831420 (+)
G2027 NA non-coding downstream 390504 11905983 ~ 11906188 (+)
G2042 NA non-coding downstream 510647 12026126 ~ 12028193 (+)
G2086 NA non-coding downstream 572058 12087537 ~ 12088986 (+)
AMCG00003606 NA other upstream 18808 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 27474 11461663 ~ 11482931 (+)
AMCG00003570 NA other upstream 1728649 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 2246937 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 2403640 9075890 ~ 9106765 (+)
G1989 cnr1,LOC104936193 other downstream 58252 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 209604 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 1387087 12902566 ~ 12917002 (+)
AMCG00003648 LOC106571761 other downstream 1510090 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 1639581 13155060 ~ 13206839 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000135_00696281_00705815 NA coding CI01000135 null 696281 ~ 706500 (-)