AMCG00003605 (slc35a1,LOC106607707)


Basic Information

Item Value
gene id AMCG00003605
gene name slc35a1,LOC106607707
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11519506 ~ 11527074 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003605
CCCTGTGTGAACTtgataatgttaataaaatattttaaaaacatccgGGTAGGAATAcagttataattaatattatacatcaTGACTTTTTTAAAGAATAGTTAAAATGGAACAAAGAATGTAGCAATGACTGGCCTGTTTCCTCTGCCCAGATTGTTGTGTTCACGCAGCTCGTTTCAGAAAGAATTCAAATGCAAAGTGGTGAATGGCCAAGtcggtgtatatatgttttgaatttgtttctCTGTATTTCAGAACAAGTGAGCATTTACTTCAAGATTTACTGCCTGACGGTGATGACGCTGGTCGCCGCCACCTATACGGTCGCGCTGCGATACACCAGGACAGTATCAAAGGATATGTATTTCTCCACCACAGCGGTTTGCCTTACTGAAATCATCAAATTAATTCTGAGCTTGGGGATGTTAGCAAAgGAAACTGGGAGTCTGGGGAAGCTGAAAGCATCCATTACAGAGAATATATTCAGGAGTCCCAAAGAGCTACTCAAACTCAGTGTTCCTTCTTTGGTGTATGCTGTTCAGAATAACATGGCCTTCGTGGCTCTCAGTAATCTCGATGCTGCTGTCTATCAGGTGACATACCAGCTGAAGATCCCCTGCACGGCGCTGTGCACTGTCCTCATGCTGCACAGATCCCTCAACAGACTGCAGTGGTTCTCCGTCTTCATGCTGTGTGGCGGCGTCACGCTTGTGCAGTGGAACCCAGCAACTTCCAACATGGTCCAGGTTGAGCAGAACCCCATTCTGGGTTTTGTAGCAATTGCAATTGCAGTTTTGTGCTCTGgatttgcagGCGTGTACTTTGAGAAGGTCCTGAAGAGCTCAGACACCTCCCTCTGGGTGAGGAACATCCAGATGTACTTGTCTGGGATCCTAGTCACTCTGGCCGGAGTCTACATGTCTGACGCTGCCAATGTGGTGGAGAAGGGCTTCTTCTTTGGCTACACACCATGGGtctgttttgtcattttgctggCCAGTATGGGAGGTCTGTACACCTCTGTCGTTGTGAAATACACCGACAACATCATGAAGGGCTTCTCTGCGGCTTTAGCCATTGTGCTGTCTACCATCGCCTCAGTGACCCTGTTTGGCTTACAGATCActgcAACATTTGCCTCGGGCACATTCCTGGTATGTATTTCCATATACTTGTATGGTTTACCCAAGCAAGAAACAACAAAGATTTCAAAAGAAGAAATGGACAAATCATCTAAACAGAAGCTGATCTCAGTCTGAGCCCTGGATGAACTGTTTGTAAATTGAAGTATTAACTGCTGAGTGGAGAGGCAGACACTTGTTTCCACTTGCAGACAATTCGTGggactttttttaattttcatagtAAATAATTTAGTTGCCTAGAGTTTAAAGTACGCGCCTTTTTATTGGATTTTCCACATGGGAAGGCTTTTTCCTTGATTATTGCCATTTTCATGACTGGAAGATGAGCAAGACAGTCATACCCACCCACCCTTAATATCATGGACATATTAAAGCGAGAGGTGacaaattcaaaacagaaaagtatTCTACTTGACTTTGCACTGTGCAATTGCCAAGGACAACAGTGTGGGGAGAGCAAGATCAAGTACACTGAAATGttgtacacatacatacacgtgtgcatgtgtgtgtgtgtgtgtgtgaaacagagAAACGCAATCTTCACTGACAGAAGAATTGTTGCCTGTGAGATGAATAATAGAGGGGTCCCTCAAGGGCCCAAGTACGGCCGTGAAGACTCCTCACACATTCTCAAACCATCTCTACAGCAGAGGACATCCGAGTCTTcgctgcttttttcttttttggaggCACGCTCTCGCCGACGTGCTCTCGCTGACCAAAAGAGTCGGCTTGTCCTtgtgtttctgaaatgtttacGGCAGCCATTATGAAGAGCAGCGTTACAATCTTTGGGGATCCTGAATGTGCATGCGGACTGAAGTTCACCCTTCATTTCTGAATGCTATGAGCCGAGTATTACATGCACACCAAGAGGAAATGGTACAGCATTGAATTGGATGACTCAGTGCATCAAGAAGCCGGTTAGCGTACatgggaattttttttttttttttttaactttaggGTGGGGTGTTTAGGataacttttaattttgtttctcattgttAAATATAAAGCATCCAATGTAAGTCCCTGCCTGCTGTATGTTGTACACATAAGCACGAATAGCTGGAAAATCTACTGTGAACACAGTGGGTTTAATATGGAACAAATGTGTATTCTGTGGGTAGTGTCAATCACTTGATCATGACTCAACTTTTGCCAAAAGCTCAGTACCAGCAATCAGGTTTATAGATTAACCGATGGATATGTAGTATTTTAATGTGTCATTTTTAAGCTAAAATcgatattttgtttatattatatcgATATCGACTGGTCTATCACTTGTAATGTAGGTGTCTAGTAGAGTGATATCACTTCTTATCATGAACAACCACAGCCTTTCAGTTTTTAAGGCAATATCAGTCATTGACTGAATTAAACTGGAATCCTTCAGGATTCACACTGAGTTGCTCCCCTGTAACTAAATGTTCCTTTTGACATTCCTCTTCACGGCACCTGTAAACCTACAATCATGCCCTGATCAAAAAAATCCACCTGCGTGTAACCATTTACTATGTAATGCAGACTTTTCTTACTCCATGCATGATTTAATTTGTGCACAGTACATCTGCAAAAAAGTAATGAACCTAAAACCCCCATTACATGTACTGCAAAAAGTATATTTGGAGTGAGGAGAAAATAACATACGATACATTTCTTGCTGGCAGGTGCCGCTGGGTACAAAAACAGATTCAGATTGTCAAAATCTTATCCAAAAATAACTACTTCAGCTGTTTAACTAGATTTCTGAAATGTGGAATGTTTTTGTATACAGCTTTTCAATCCTTGCAGTCAAGGTAACTATCTCCTACTTTTTATATTAAGGGGGATTGTGTAAATGTCTCCTATTTAAATATCTGAGCCAACAGTCTTCTGGTATTTCTGTGGACAATTCCCAAGTTAAAGTGCCAATTAAAAACACTTCCTCTCAGGAGAGTGAAATAATTCAGTCTATTGTCAAGAGGTACACTCAATTGCCTGAATATAGAAAGGTTTTGTTGCAAAGGGGGAGATGTGTAAAACCCCTCTACTTAAATACAAAACCAGGTTCTTGCAGGTTAAacatggggggagggggaaatcaattaaaatgtcatattcATGTAATGTTAAGAATCTCATGATAAAGACATGGAATGTCACTTTAAATCATAa

Function

symbol description
slc35a1 Predicted to enable UDP-galactose transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIf. Orthologous to human SLC35A1 (solute carrier family 35 member A1).

NR:

description
PREDICTED: CMP-sialic acid transporter-like isoform X2

GO: NA

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003605 True 3311 mRNA 0.41 7 11519506 11527074

Neighbor

gene id symbol gene type direction distance location
AMCG00003608 NA coding upstream 4027 11510405 ~ 11515479 (+)
AMCG00003607 NA coding upstream 11200 11493952 ~ 11508306 (+)
AMCG00003603 NA coding upstream 59443 11449320 ~ 11460063 (+)
AMCG00003599 NA coding upstream 176482 11316201 ~ 11343024 (+)
AMCG00003598 NA coding upstream 246346 11261733 ~ 11273160 (+)
AMCG00003609 NA coding downstream 15493 11542567 ~ 11559145 (+)
AMCG00003615 NA coding downstream 205481 11732555 ~ 11742638 (+)
AMCG00003621 NA coding downstream 297711 11824785 ~ 11828430 (+)
AMCG00003620 NA coding downstream 312663 11839737 ~ 11840496 (+)
AMCG00003622 NA coding downstream 324753 11851827 ~ 11856733 (+)
G1902 NA non-coding upstream 116477 11331039 ~ 11403029 (+)
G1891 NA non-coding upstream 291231 11227959 ~ 11228275 (+)
G1855 NA non-coding upstream 468862 11050151 ~ 11050644 (+)
G1747 ralgapa2 non-coding upstream 1061741 10431664 ~ 10457765 (+)
G1706 NA non-coding upstream 1281245 10236856 ~ 10238261 (+)
G1987 NA non-coding downstream 42978 11570052 ~ 11570410 (+)
G2018 NA non-coding downstream 286048 11813122 ~ 11831420 (+)
G2027 NA non-coding downstream 378909 11905983 ~ 11906188 (+)
G2042 NA non-coding downstream 499052 12026126 ~ 12028193 (+)
G2086 NA non-coding downstream 560463 12087537 ~ 12088986 (+)
AMCG00003606 NA other upstream 27909 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 36575 11461663 ~ 11482931 (+)
AMCG00003570 NA other upstream 1737750 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 2256038 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 2412741 9075890 ~ 9106765 (+)
G1989 cnr1,LOC104936193 other downstream 46657 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 198009 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 1375492 12902566 ~ 12917002 (+)
AMCG00003648 LOC106571761 other downstream 1498495 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 1627986 13155060 ~ 13206839 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location