G1747 (ralgapa2)


Basic Information

Item Value
gene id G1747
gene name ralgapa2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10431664 ~ 10457765 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2056
CACAGCGTCAATTTCCCATTCAACCCGGAGCGACGGAGGAGAAAGTGGGAAAGACGGGGGACTGCATGGTATAAAGGAGGAGACCTCAGCCGCCAGGATCGCCTTCTACAGCGGGATGTTTTCGCGAAGGAGCCATGGCGACGTCAAGAAATCTTCACAGAAAGTTCTGGACCCAAAGAAGGACGTCCTGACCCGCCTGAAGCACCTCCGCTCCCTGCTCGACATTCTTGAAAAGGGGGAGCTGAAAACGTTCTTCGAAAACAACTGCTCtcaaatttattttatcttctaTGAAAATTTCATTACACTGGAAAGTaacctaaaacaaaaagggaACAAATCGCAAAGAGAGGAGCTGGACTcaattctctttctttttgaagTAAGTTCTGTTGTAAATTGATACTAATGTGATGAACATGTATTAACATCAGT

Function

symbol description
ralgapa2 Predicted to enable GTPase activator activity. Predicted to act upstream of or within positive regulation of GTPase activity and regulation of small GTPase mediated signal transduction. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human RALGAPA2 (Ral GTPase activating protein catalytic subunit alpha 2).

NR:

description
PREDICTED: ral GTPase-activating protein subunit alpha-2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2056 True 435 lncRNA 0.51 3 10431664 10457765

Neighbor

gene id symbol gene type direction distance location
AMCG00003576 nkx2.1a,LOC105015794,LOC106610802,LOC102798947,LOC108428605,LOC100709876,LOC101467433 coding upstream 199993 10230121 ~ 10231671 (+)
AMCG00003575 nkx2.2a,LOC103359019,LOC101157822,LOC101466937,LOC107392558 coding upstream 249704 10179342 ~ 10181960 (+)
AMCG00003571 foxa2,LOC105909438 coding upstream 536676 9892778 ~ 9894988 (+)
AMCG00003568 LOC104960473 coding upstream 555821 9866100 ~ 9875843 (+)
AMCG00003569 prkd3,LOC101070414,LOC105015789 coding upstream 577992 9820927 ~ 9853672 (+)
AMCG00003580 NA coding downstream 18072 10475837 ~ 10495920 (+)
AMCG00003581 ralgapa2 coding downstream 48793 10506558 ~ 10532085 (+)
AMCG00003583 crnkl1,LOC106607683,LOC106571265 coding downstream 159792 10617557 ~ 10623372 (+)
AMCG00003590 NA coding downstream 171808 10629573 ~ 10631480 (+)
AMCG00003585 NA coding downstream 178723 10636488 ~ 10657573 (+)
G1706 NA non-coding upstream 193403 10236856 ~ 10238261 (+)
G1574 NA non-coding upstream 728186 9700557 ~ 9703478 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 1404032 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 1587582 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 1731110 8699466 ~ 8700554 (+)
G1855 NA non-coding downstream 592386 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 770194 11227959 ~ 11228275 (+)
G1902 NA non-coding downstream 873274 11331039 ~ 11403029 (+)
G1987 NA non-coding downstream 1112287 11570052 ~ 11570410 (+)
G2018 NA non-coding downstream 1355357 11813122 ~ 11831420 (+)
AMCG00003570 NA other upstream 649908 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 1168196 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 1324899 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 1489913 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 1779194 8649125 ~ 8652470 (+)
AMCG00003604 NA other downstream 1003898 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 1032420 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 1115966 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 1267318 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 2444801 12902566 ~ 12917002 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location