RNA id: TU2056


Basic Information

Item Value
RNA id TU2056
length 435
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G1747
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10431664 ~ 10457765 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGCGTCAATTTCCCATTCAACCCGGAGCGACGGAGGAGAAAGTGGGAAAGACGGGGGACTGCATGGTATAAAGGAGGAGACCTCAGCCGCCAGGATCGCCTTCTACAGCGGGATGTTTTCGCGAAGGAGCCATGGCGACGTCAAGAAATCTTCACAGAAAGTTCTGGACCCAAAGAAGGACGTCCTGACCCGCCTGAAGCACCTCCGCTCCCTGCTCGACATTCTTGAAAAGGGGGAGCTGAAAACGTTCTTCGAAAACAACTGCTCtcaaatttattttatcttctaTGAAAATTTCATTACACTGGAAAGTaacctaaaacaaaaagggaACAAATCGCAAAGAGAGGAGCTGGACTcaattctctttctttttgaagTAAGTTCTGTTGTAAATTGATACTAATGTGATGAACATGTATTAACATCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2011 lncRNA upstream 193403 10236856 ~ 10238261 (+) True G1706
TU1863 lncRNA upstream 728186 9700557 ~ 9703478 (+) True G1574
TU1701 lncRNA upstream 1324900 9100618 ~ 9106764 (+) False AMCG00003544
TU1676 lncRNA upstream 1404032 9009297 ~ 9027632 (+) False G1430
TU1675 lncRNA upstream 1409091 9009297 ~ 9022573 (+) True G1430
TU2211 lncRNA downstream 592386 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 770194 11227959 ~ 11228275 (+) True G1891
TU2270 lncRNA downstream 873274 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA downstream 910258 11368023 ~ 11403029 (+) True G1902
TU2326 lncRNA downstream 1004573 11462338 ~ 11482931 (+) False AMCG00003604
AMCG00003576 mRNA upstream 199993 10230121 ~ 10231671 (+) True AMCG00003576
AMCG00003575 mRNA upstream 249704 10179342 ~ 10181960 (+) True AMCG00003575
AMCG00003571 mRNA upstream 536676 9892778 ~ 9894988 (+) True AMCG00003571
AMCG00003568 mRNA upstream 555821 9866100 ~ 9875843 (+) True AMCG00003568
AMCG00003569 mRNA upstream 577992 9820927 ~ 9853672 (+) True AMCG00003569
AMCG00003580 mRNA downstream 18072 10475837 ~ 10495920 (+) True AMCG00003580
AMCG00003581 mRNA downstream 48793 10506558 ~ 10532085 (+) True AMCG00003581
AMCG00003583 mRNA downstream 159792 10617557 ~ 10623372 (+) True AMCG00003583
AMCG00003590 mRNA downstream 171808 10629573 ~ 10631480 (+) True AMCG00003590
AMCG00003585 mRNA downstream 178723 10636488 ~ 10657573 (+) True AMCG00003585
TU1883 other upstream 650762 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 1168196 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 1779260 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 3936759 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 1032420 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 1115966 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 2579672 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 2697295 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 3960751 14418516 ~ 14419732 (+) True G2440

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024212 False 6093 mRNA 0.52 41 NC_007128.7 41488478 ~ 41798856 (-)
eurasian perch (Perca fluviatilis) TU278517 False 940 lncRNA 0.41 4 NC_053131.1 24329113 ~ 24355916 (+)