RNA id: AMCG00003575


Basic Information

Item Value
RNA id AMCG00003575
length 423
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00003575
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10179342 ~ 10181960 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGTTGACCAACACAAAGACGGGCTTTTCTGTAAAGGACATCTTGGACCTCCCTGATACGAATGATGAAGAAGGATCTATGATAATCCTTACACAAGATGGCTTGCCACTACGGACAGCATTCAATACTCATAACCACAGGTACAAGATGAAGCGAGCCCGGGCCGAGAAAGGTATGGAAGTGACCCATCTCCCCTCCCCTCGGCGGGTGGCAGTGCCCGTCCTAGTCAGGGATGGCAAGCCGTGCCATACTCTTAAAGCTCAGGACTTGGCAGCCACTTTCCAGGCTGGGATCCCTTTCTCGGCATATAGCGCCCAGTCTCTCCAGCATATGCAATATAACGCCCAGTACAGTTCCGCCACCACTCCACAGTTCCCCACAGCGCACCATTTGGTGCAAACACAACAGTGGACTTGGTGA

Function

GO:

id name namespace
GO:0021530 spinal cord oligodendrocyte cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0014044 Schwann cell development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0008347 glial cell migration biological_process
GO:0021508 floor plate formation biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K08029 NKX2-2; homeobox protein Nkx-2.2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1863 lncRNA upstream 475864 9700557 ~ 9703478 (+) True G1574
TU1701 lncRNA upstream 1072578 9100618 ~ 9106764 (+) False AMCG00003544
TU1676 lncRNA upstream 1151710 9009297 ~ 9027632 (+) False G1430
TU1675 lncRNA upstream 1156769 9009297 ~ 9022573 (+) True G1430
TU2011 lncRNA downstream 54896 10236856 ~ 10238261 (+) True G1706
TU2056 lncRNA downstream 249704 10431664 ~ 10457765 (+) True G1747
TU2211 lncRNA downstream 868191 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 1045999 11227959 ~ 11228275 (+) True G1891
TU2270 lncRNA downstream 1149079 11331039 ~ 11403029 (+) False G1902
AMCG00003571 mRNA upstream 284354 9892778 ~ 9894988 (+) True AMCG00003571
AMCG00003568 mRNA upstream 303499 9866100 ~ 9875843 (+) True AMCG00003568
AMCG00003569 mRNA upstream 325670 9820927 ~ 9853672 (+) True AMCG00003569
AMCG00003570 mRNA upstream 397586 9777684 ~ 9781756 (+) False AMCG00003570
AMCG00003562 mRNA upstream 405245 9760860 ~ 9774097 (+) True AMCG00003562
AMCG00003576 mRNA downstream 48161 10230121 ~ 10231671 (+) True AMCG00003576
AMCG00003580 mRNA downstream 293877 10475837 ~ 10495920 (+) True AMCG00003580
AMCG00003581 mRNA downstream 324598 10506558 ~ 10532085 (+) True AMCG00003581
AMCG00003583 mRNA downstream 435597 10617557 ~ 10623372 (+) True AMCG00003583
AMCG00003590 mRNA downstream 447613 10629573 ~ 10631480 (+) True AMCG00003590
TU1883 other upstream 398440 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 915874 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 1526938 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 3684437 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 1308225 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 1391771 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 2855477 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 2973100 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 4236556 14418516 ~ 14419732 (+) True G2440

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024217 True 1555 mRNA 0.44 3 NC_007128.7 42210944 ~ 42218652 (-)
grasscarp (Ctenopharyngodon idella) CI01000314_00705124_00706620.mRNA True 1140 mRNA 0.46 2 CI01000314 704768 ~ 706651 (-)
striped catfish (Pangasianodon hypophthalmus) TU196128 False 965 TUCP 0.56 3 NC_047604.1 14727204 ~ 14733850 (-)