AMCG00003590


Basic Information

Item Value
gene id AMCG00003590
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10629573 ~ 10631480 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003590
ATGGCAGACGAAAGGTCTCGGCGATCCGAAGTTTGGAAGTTTTTCAAGATAGTGGAGAATCAAGGGAAGAATAAAGTGTCCTGCAGTCTGTGCTCTTCGCAGCTCGCCTATGTCGGAGGCAGCACTGGGTCGATGTACAACCATCTCCGGTTTAAACACAGTGAGATCTTTATTTCTAACACCCGACGGTGCAGAATAGTTCGAGCTTGCCGATTAGCCTACCAAAAAAATAACCAGGACAGTACTGATCCGGCGGAGAAAAACGACCGGGAAAAACGCATGGAAAAGCTGGTTGCAATGTGCGCTATGGACCTACATCCGCCCAGTATTGTGGAGGGGATGGGGTTCAAGGCATTCATTCAAGAAATCAACCCGATCTACGAGATCCCCGGGAAGAAGGAGCTGCAACGCTGCCTGAATTTGCACTATGAAGCAGAAAAACACGCACTGAAGGAGAAGTTGGCCAATGAAGTGGGCATGGGGGTCACCGTGGATCTGTGGTCCACTCTCTCCGCCGAGGAATacttcacactgactgtacaTTTCTTGGATAAAAAATGGCAACTGAATCACTTCGTACTGGGGACAAGGAAAGTACAAGGACATCTTCCCAGTCATAGTATAACAGTAGAAATCAACAGACTATTCACTGAGTTTGAGGtcatgaaaaacaaagtgtATGGGTTTGTGACAGAAAACGAGGCGAATATGGCGAACTGTGCCAACACTTTCGGTTGGCGTCACTTTAAATGCTTTGGCCAGACGCTGCAACTGGCCATCCGTTGTGCATTTGATGAAGTCGGGGTCTTGTCCGATACCATATCTGCTGCAAAGGCACTAGTTGGCCATTTCAACCAGTCCGTTCTGGCCAGCCTGGAGCTCCAGCCGCAGCTGAAGGCAGATTTACCCCAGACGGAGCTGGTCAGCGATTGTGCTTCCCACTGGTACACAACCTTTGATATGTTCGAGTGTCTGCTGCAGCATCGCCTGAGTATATATGAAGCGCTCCATCACGCGGAAGTGGTCAGCCCCTCCGAAACCACCATGTATGAACTCTCTGACAGCCAGTGGAGTGTGATGCAGGCCATGGTTCCTGTGCTTCGGCCCCTGTACGTGGCCACACGCATCATGTGTTCAGAGGAGTACCCGGGTCTCAGTGGGGTTTACCCCATACTCTGCAGCTTAAGAAGCCAACACCTTCGGGTGTACAAAGCTGACATAGAAGCCGTGGCTGAGTTTAAGAGAATAGTGACATCTATTTTAGACAGGTGCTACAGCATGGACAACTGGTGCAAAGACCCAGCATTGATCTGCTCTTTCCTGGATCCCAGGTACAAGTCTCTCCTGTTCCTTAAGCCAACGCAGCGCAGTGCTGTCCAAGCAGAAGTCATCTCTCTCATACAGGCTGAACGCCATTCAGGAACACAGAAGAGCGTGCAGCCTTCTGCCAAACGGAGCAGGTCGGAAAACATGGAGTCGGACATGGCATTCCTTCTTGGGAAGTATTACCAGGAGGGCAGTGCCACTAATTCGTCCTGCACTCCTGCAGATGAAGTCCAGCAGTATGTCACTGGCAAGGCTGTGCCCACTGCCGTTAATCCCATTAGCTGGTGGGCAGAGAACGCTTCCAGCTTTCCAACTCTGGCTAAAGTGGCACGGAAGTTCCTGTGCATTCCAGCGACTTGCGTCCCGTCCGGAAGAGTCTTCTCCACGGCGGATAGGGCTTTACTGGACCAACGGGCCTCTCTGGATGCGGATGCTTTGGACGCGCTGCTGTTTGTGCGCAGTGCAATGAAAGAGCTGACACTCCCTGCAGACGGCAGCGAGACGCCAGTCACAGACCTGGCAGAGGAGGCTGGTGCTGCAGAGCTAGGTCTTCAGATTAAGCAGGAATGTTCAAATTCCTAA

Function

GO: NA

KEGG:

id description
K24637 ZBED1; zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003590 True 1908 mRNA 0.51 1 10629573 10631480

Neighbor

gene id symbol gene type direction distance location
AMCG00003583 crnkl1,LOC106607683,LOC106571265 coding upstream 6201 10617557 ~ 10623372 (+)
AMCG00003581 ralgapa2 coding upstream 97488 10506558 ~ 10532085 (+)
AMCG00003580 NA coding upstream 133653 10475837 ~ 10495920 (+)
AMCG00003576 nkx2.1a,LOC105015794,LOC106610802,LOC102798947,LOC108428605,LOC100709876,LOC101467433 coding upstream 397902 10230121 ~ 10231671 (+)
AMCG00003575 nkx2.2a,LOC103359019,LOC101157822,LOC101466937,LOC107392558 coding upstream 447613 10179342 ~ 10181960 (+)
AMCG00003585 NA coding downstream 5008 10636488 ~ 10657573 (+)
AMCG00003591 NA coding downstream 393729 11025209 ~ 11048576 (+)
AMCG00003594 LOC106565365,LOC106610693 coding downstream 452683 11084163 ~ 11098960 (+)
AMCG00003593 myo6b coding downstream 475914 11107394 ~ 11132470 (+)
AMCG00003598 NA coding downstream 630253 11261733 ~ 11273160 (+)
G1747 ralgapa2 non-coding upstream 171808 10431664 ~ 10457765 (+)
G1706 NA non-coding upstream 391312 10236856 ~ 10238261 (+)
G1574 NA non-coding upstream 926095 9700557 ~ 9703478 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 1601941 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 1785491 8843827 ~ 8844082 (+)
G1855 NA non-coding downstream 418671 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 596479 11227959 ~ 11228275 (+)
G1902 NA non-coding downstream 699559 11331039 ~ 11403029 (+)
G1987 NA non-coding downstream 938572 11570052 ~ 11570410 (+)
G2018 NA non-coding downstream 1181642 11813122 ~ 11831420 (+)
AMCG00003570 NA other upstream 847817 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 1366105 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 1522808 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 1687822 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 1977103 8649125 ~ 8652470 (+)
AMCG00003604 NA other downstream 830183 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 858705 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 942251 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 1093603 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 2271086 12902566 ~ 12917002 (+)

Expression


Co-expression Network