RNA id: TU1863


Basic Information

Item Value
RNA id TU1863
length 1803
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G1574
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9700557 ~ 9703478 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAACAGTGTTACAAAGGCAGTTAAGgtacaatgcattattattatacaggtTCTTGATATTAAACTTTAATACTGTTGATCAGACTCTTGCAATACATCAGCTATCTGTTTTCTTGATCTGTGTGAACAATACAAGGCGTTTCTATTGTGTGGTGTATTACTGAATAGGTGAAACTGCGGAGGTTTACAAAGTCAGTAAGTCAAGTGAAATAAAGATGTCCTATCAAAAATAACCCAGACACCACTGTCTGCTTGCACTATCAGTCATTCGCATGAAGCCACAGAAAGTGGCTGCAGACTGGAATTGAAAACTAATAATAGACTAAAATACTTGTAACCCAGAGAGAACTGAAAATAGTTCTTCTGTATTATTGCCTCCATCTGACTTCAGACCATGGAGTTCAACATCAACAAGAAAGGGGGTTGGTATTGCATCTACAGAGGACTGGAACAGTACTGCATAAATATGTCCTTAATGTATAGCATACGAGGCAACCATTGGCAAGTTTGAAATGTcaacaaatacaacagaaaaacatgaaaagaaacatacaactgaaatataaaaagtaagAATCTGgttgaaagcaaaacatttgtacaattgtctttcctcttttaaaaagctttactCGTTTTAAATAACGTACTCCTTTATTTGGGTAGAACTACTGCAGAGACAGACGAAAAAGGAGACACTAAAATAGGTCAAACACTGTGGCGAGTGAAAAATCAAAACAGCTGTACAGTAAGAGTTAACAAAATggtcagttttcttttcttttcaataacTTAATAATTACACGTAGAAGACTTAAATTAAGAACACAGCCAATGTTTGCTAGAcctgaattattttctcttgatcatgtgcaaaacaaatgcactcACAGACCCTCAACTGCATCCTAATACTTTCTGTGAAGCCATGATGACATGACTCCACAAAAACGTTTCCACTCTCCGTCTTTCCAAAGAGAGTAAAGAACACTGAAACTTGCTTGGAATGAGAACAAACACCTCAGGAGTAAGGGAACAGCCCGGTACTGCGTTTGTAATACTGAATGCGCAGAAAGACCACTGGGACAGCAGAACAAAAGGCACTCAAGAGATTGACAGGGAGCTCCGACACAGGCAGCACAATCAGTGAGTCAATAGCTTAAGCCTCGTGATCCAACTGACCAGTAGAGAGGGCTCCGCGGGGGGCGTTTTGGTGGGCGAGGTGACAGGGCTCTTTTTGGCCACGTCTTCCTGGTAGGGGATTGTGGCGCTGTGGTGCAGGTCCGGGTTCACTAAGCATCGGCTGCCTCGGATGTGATCTACACCTCGGATTAAGTTCCGGTCAGGGGCTGGTCTGTACAGCTGGGGGATGCTTGGGCTCTCTTCAACAATCGGAGGGATGCGCTCATTACTCAAGTATCTGTACAAGATGTCTTCACCTGCAGGGAGATAATGTGGTGTGTCGTTTCGGGAGACGTACCTTTCCTCCCCGACGTCCAAGGCTTTGAGAAGGAGTCCACTGGTCCCAGGCAGCTGCTGTCCACAGGCATGGACAGAGGACGAGGTTTTCCTGTATGGGGATAGAGATTGACAGTCAGGGAGTAGGCCATTACACTCTAACAGAGATCCACTGTATTCACCCTGCCACAGTGGAGAGCAACATCGCCAATGGTTTCAACCGTTTGAATGACCTGGTGCCTGGAATGGTATCACTTGAGCTGTTGCAGAGAAAAGCCCTCTTATTATGGGATTGCTTTAGATTCCTCACTTGTGTCCCACCTCTATGTACAGTACATCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701 lncRNA upstream 593793 9100618 ~ 9106764 (+) False AMCG00003544
TU1676 lncRNA upstream 672925 9009297 ~ 9027632 (+) False G1430
TU1675 lncRNA upstream 677984 9009297 ~ 9022573 (+) True G1430
TU1677 lncRNA upstream 680339 9009297 ~ 9020218 (+) False G1430
TU1625 lncRNA upstream 758806 8940151 ~ 8941751 (+) False AMCG00003541
TU2011 lncRNA downstream 533378 10236856 ~ 10238261 (+) True G1706
TU2056 lncRNA downstream 728186 10431664 ~ 10457765 (+) True G1747
TU2211 lncRNA downstream 1346673 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 1524481 11227959 ~ 11228275 (+) True G1891
TU2270 lncRNA downstream 1627561 11331039 ~ 11403029 (+) False G1902
AMCG00003558 mRNA upstream 160476 9538315 ~ 9540081 (+) True AMCG00003558
AMCG00003556 mRNA upstream 176112 9521395 ~ 9524445 (+) True AMCG00003556
AMCG00003557 mRNA upstream 181161 9511564 ~ 9519396 (+) True AMCG00003557
AMCG00003551 mRNA upstream 437247 9255872 ~ 9263310 (+) False AMCG00003551
AMCG00003547 mRNA upstream 520796 9172738 ~ 9179761 (+) True AMCG00003547
AMCG00003562 mRNA downstream 57382 9760860 ~ 9774097 (+) True AMCG00003562
AMCG00003570 mRNA downstream 74206 9777684 ~ 9781756 (+) False AMCG00003570
AMCG00003569 mRNA downstream 117449 9820927 ~ 9853672 (+) True AMCG00003569
AMCG00003568 mRNA downstream 162622 9866100 ~ 9875843 (+) True AMCG00003568
AMCG00003571 mRNA downstream 189300 9892778 ~ 9894988 (+) True AMCG00003571
TU1763 other upstream 437089 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 1048153 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 3205652 6487692 ~ 6494905 (+) True G1012
TU1883 other downstream 74030 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 1786707 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 1870253 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 3333959 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 3451582 13155060 ~ 13156627 (+) False AMCG00003655

Expression Profile